RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 PLEKHH1Q9ULM0 1364 aa3.29□□□□□ -1.88
LIG4-203ENST00000442234 SUPT6HQ7KZ85 1726 aaKnown RBP3.29□□□□□ -1.88
LIG4-203ENST00000442234 SETBP1Q9Y6X0 1596 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 ASXL3Q9C0F0 2248 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 TK2O00142 265 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 ZKSCAN8Q15776 578 aaPredicted RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 SLC15A2Q16348 729 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 C9orf131Q5VYM1 1079 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 NBPF10Q6P3W6 841 aaKnown RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 DRC7Q8IY82 874 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 C17orf53Q8N3J3 647 aaPredicted RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 PRPF38AQ8NAV1 312 aaKnown RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 FAM184AQ8NB25 1140 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 PIBF1Q8WXW3 757 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 NBPF3Q9H094 633 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 SLC24A3Q9HC58 644 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 IFT57Q9NWB7 429 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 KLHL40Q2TBA0 621 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 NME9Q86XW9 330 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 SYAP1Q96A49 352 aaPredicted RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 C22orf23Q9BZE7 217 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 TMX4Q9H1E5 349 aaPredicted RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 TTC12Q9H892 705 aaPredicted RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 RBM27Q9P2N5 1060 aaKnown RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 DDX41Q9UJV9 622 aaKnown RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 SETD1AO15047 1707 aaKnown RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 LRRC9Q6ZRR7 1453 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 CHD8Q9HCK8 2581 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 SETSIPP0DME0 302 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 HSPA1AP0DMV8 641 aaKnown RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 HSPA1BP0DMV9 641 aaKnown RBP3.28□□□□□ -1.88
LIG4-203ENST00000442234 ATP2B1P20020 1258 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 NUCB2P80303 420 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 ZSCAN26Q16670 478 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 CCDC125Q86Z20 511 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 GTF3C6Q969F1 213 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 RBSNQ9H1K0 784 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 EMILIN3Q9NT22 766 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 ACEP12821 1306 aa3.28□□□□□ -1.88
LIG4-203ENST00000442234 SDK1Q7Z5N4 2213 aa3.28□□□□□ -1.89
LIG4-203ENST00000442234 SYCE3A1L190 88 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 CAND2O75155 1236 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 BMS1Q14692 1282 aaKnown RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 WDR43Q15061 677 aaKnown RBP eCLIP3.27□□□□□ -1.89
LIG4-203ENST00000442234 RABEP1Q15276 862 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 FOXD4L6Q3SYB3 417 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 TTC19Q6DKK2 380 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 MCTP2Q6DN12 878 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 FOXD4L3Q6VB84 417 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 ZNF397Q8NF99 534 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 WDR70Q9NW82 654 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 ARGLU1Q9NWB6 273 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 FYCO1Q9BQS8 1478 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 SETD1BQ9UPS6 1966 aaKnown RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 TMCO5BA8MYB1 307 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 MAFGO15525 162 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 LMAN1P49257 510 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 ZSCAN23Q3MJ62 389 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 MFSD4BQ5TF39 518 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 GBP6Q6ZN66 633 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.27□□□□□ -1.89
LIG4-203ENST00000442234 CCDC34Q96HJ3 373 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 LRRC7Q96NW7 1537 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 CARD11Q9BXL7 1154 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 SETD5Q9C0A6 1442 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 BIN2Q9UBW5 565 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 CTNNA3Q9UI47 895 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 RRP15Q9Y3B9 282 aaKnown RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 KIF14Q15058 1648 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 RNF17Q9BXT8 1623 aaKnown RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 CCDC196A0A1B0GTZ2 297 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 PES1O00541 588 aaKnown RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 REC8O95072 547 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 SMC2O95347 1197 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 IBSPP21815 317 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 LBX1P52954 281 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 RASSF7Q02833 373 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 HDAC1Q13547 482 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 MAP1SQ66K74 1059 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 FMNL3Q8IVF7 1028 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 PPM1EQ8WY54 764 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 C16orf45Q96MC5 204 aaPredicted RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 SLC12A5Q9H2X9 1139 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 GOPCQ9HD26 462 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 RRP7AQ9Y3A4 280 aaKnown RBP3.27□□□□□ -1.89
LIG4-203ENST00000442234 PARP3Q9Y6F1 533 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 ARHGEF12Q9NZN5 1544 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 ERBINQ96RT1 1412 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 NRDCO43847 1150 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 GRIN3BO60391 1043 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 ZPR1O75312 459 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 HMOX1P09601 288 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 FOSBP53539 338 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 VPS72Q15906 364 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 CCDC27Q2M243 656 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 KIF18AQ8NI77 898 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 ANKRD24Q8TF21 1146 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 TBC1D32Q96NH3 1257 aa3.27□□□□□ -1.89
LIG4-203ENST00000442234 TSPY26PQ9H489 355 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 179.9 ms