RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NGEFQ8N5V2 710 aa15.81■□□□□ 0.12
PTPRF-208ENST00000437607 CNTNAP1P78357 1384 aa15.8■□□□□ 0.12
PTPRF-208ENST00000437607 MAP3K15Q6ZN16 1313 aa15.8■□□□□ 0.12
PTPRF-208ENST00000437607 UBN2Q6ZU65 1347 aa15.8■□□□□ 0.12
PTPRF-208ENST00000437607 APAF1O14727 1248 aa15.8■□□□□ 0.12
PTPRF-208ENST00000437607 CAPN15O75808 1086 aa15.8■□□□□ 0.12
PTPRF-208ENST00000437607 ITGBL1O95965 494 aaPredicted RBP15.8■□□□□ 0.12
PTPRF-208ENST00000437607 IARSP41252 1262 aaKnown RBP15.8■□□□□ 0.12
PTPRF-208ENST00000437607 EIF4A1P60842 406 aaKnown RBP15.8■□□□□ 0.12
PTPRF-208ENST00000437607 SLC51AQ86UW1 340 aa15.8■□□□□ 0.12
PTPRF-208ENST00000437607 RTKN2Q8IZC4 609 aa15.8■□□□□ 0.12
PTPRF-208ENST00000437607 SYNE4Q8N205 404 aa15.8■□□□□ 0.12
PTPRF-208ENST00000437607 THUMPD2Q9BTF0 503 aaKnown RBP15.8■□□□□ 0.12
PTPRF-208ENST00000437607 ERVV-1B6SEH8 477 aa15.79■□□□□ 0.12
PTPRF-208ENST00000437607 FZD9O00144 591 aa15.79■□□□□ 0.12
PTPRF-208ENST00000437607 CENPBP07199 599 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-208ENST00000437607 ALDH1B1P30837 517 aa15.79■□□□□ 0.12
PTPRF-208ENST00000437607 IBTKQ9P2D0 1353 aaPredicted RBP15.78■□□□□ 0.12
PTPRF-208ENST00000437607 RNF123Q5XPI4 1314 aa15.78■□□□□ 0.12
PTPRF-208ENST00000437607 NFE2L2Q16236 605 aa15.78■□□□□ 0.12
PTPRF-208ENST00000437607 HACL1Q9UJ83 578 aa15.78■□□□□ 0.12
PTPRF-208ENST00000437607 RRP7AQ9Y3A4 280 aaKnown RBP15.78■□□□□ 0.12
PTPRF-208ENST00000437607 MYL6BP14649 208 aa15.77■□□□□ 0.12
PTPRF-208ENST00000437607 GPTP24298 496 aa15.77■□□□□ 0.12
PTPRF-208ENST00000437607 GTF2E1P29083 439 aaPredicted RBP15.77■□□□□ 0.12
PTPRF-208ENST00000437607 EPHX2P34913 555 aa15.77■□□□□ 0.12
PTPRF-208ENST00000437607 EAPPQ56P03 285 aaPredicted RBP15.77■□□□□ 0.12
PTPRF-208ENST00000437607 PSMD1Q99460 953 aa15.77■□□□□ 0.12
PTPRF-208ENST00000437607 NYXQ9GZU5 481 aa15.77■□□□□ 0.12
PTPRF-208ENST00000437607 SALL2Q9Y467 1007 aaPredicted RBP15.77■□□□□ 0.12
PTPRF-208ENST00000437607 HOXA10P31260 410 aaPredicted RBP15.76■□□□□ 0.11
PTPRF-208ENST00000437607 LMOD3Q0VAK6 560 aa15.76■□□□□ 0.11
PTPRF-208ENST00000437607 SUSD4Q5VX71 490 aa15.76■□□□□ 0.11
PTPRF-208ENST00000437607 C3orf67Q6ZVT6 689 aa15.76■□□□□ 0.11
PTPRF-208ENST00000437607 ZNF34Q8IZ26 560 aa15.76■□□□□ 0.11
PTPRF-208ENST00000437607 ZBTB3Q9H5J0 574 aa15.76■□□□□ 0.11
PTPRF-208ENST00000437607 DDX60Q8IY21 1712 aaKnown RBP15.76■□□□□ 0.11
PTPRF-208ENST00000437607 THSD7BQ9C0I4 1608 aa15.76■□□□□ 0.11
PTPRF-208ENST00000437607 TMEM88BA6NKF7 163 aa15.75■□□□□ 0.11
PTPRF-208ENST00000437607 FOXN1O15353 648 aa15.75■□□□□ 0.11
PTPRF-208ENST00000437607 TMPOP42166 694 aaKnown RBP15.75■□□□□ 0.11
PTPRF-208ENST00000437607 VEGFBP49765 207 aa15.75■□□□□ 0.11
PTPRF-208ENST00000437607 NEUROD2Q15784 382 aa15.75■□□□□ 0.11
PTPRF-208ENST00000437607 KIF6Q6ZMV9 814 aa15.75■□□□□ 0.11
PTPRF-208ENST00000437607 LRP10Q7Z4F1 713 aa15.75■□□□□ 0.11
PTPRF-208ENST00000437607 GPC2Q8N158 579 aa15.75■□□□□ 0.11
PTPRF-208ENST00000437607 NTSR2O95665 410 aa15.74■□□□□ 0.11
PTPRF-208ENST00000437607 MAP1SQ66K74 1059 aaPredicted RBP15.74■□□□□ 0.11
PTPRF-208ENST00000437607 GIGYF2Q6Y7W6 1299 aaKnown RBP15.74■□□□□ 0.11
PTPRF-208ENST00000437607 POLR2AP24928 1970 aaKnown RBP15.74■□□□□ 0.11
PTPRF-208ENST00000437607 PDIA6Q15084 440 aa15.73■□□□□ 0.11
PTPRF-208ENST00000437607 NCBP3Q53F19 620 aaKnown RBP15.73■□□□□ 0.11
PTPRF-208ENST00000437607 CC2D2BQ6DHV5 1058 aa15.73■□□□□ 0.11
PTPRF-208ENST00000437607 PNMA8AQ86V59 439 aaPredicted RBP15.73■□□□□ 0.11
PTPRF-208ENST00000437607 RPGRQ92834 1020 aaKnown RBP15.73■□□□□ 0.11
PTPRF-208ENST00000437607 CLEC11AQ9Y240 323 aa15.73■□□□□ 0.11
PTPRF-208ENST00000437607 ERBB4Q15303 1308 aa15.72■□□□□ 0.11
PTPRF-208ENST00000437607 LRRC37AA6NMS7 1700 aa15.72■□□□□ 0.11
PTPRF-208ENST00000437607 RIPK4P57078 832 aa15.72■□□□□ 0.11
PTPRF-208ENST00000437607 CCDC27Q2M243 656 aa15.72■□□□□ 0.11
PTPRF-208ENST00000437607 CNTROBQ8N137 903 aa15.72■□□□□ 0.11
PTPRF-208ENST00000437607 CRAMP1Q96RY5 1269 aa15.72■□□□□ 0.11
PTPRF-208ENST00000437607 SCNN1DP51172 638 aa15.71■□□□□ 0.11
PTPRF-208ENST00000437607 PROSER3Q2NL68 480 aa15.71■□□□□ 0.11
PTPRF-208ENST00000437607 JDP2Q8WYK2 163 aa15.71■□□□□ 0.11
PTPRF-208ENST00000437607 GJA3Q9Y6H8 435 aa15.71■□□□□ 0.11
PTPRF-208ENST00000437607 RASSF10A6NK89 507 aa15.7■□□□□ 0.1
PTPRF-208ENST00000437607 TCERG1O14776 1098 aaKnown RBP15.7■□□□□ 0.1
PTPRF-208ENST00000437607 PPEF1O14829 653 aaPredicted RBP15.7■□□□□ 0.1
PTPRF-208ENST00000437607 ANXA1P04083 346 aa15.7■□□□□ 0.1
PTPRF-208ENST00000437607 RBM17Q96I25 401 aaKnown RBP15.7■□□□□ 0.1
PTPRF-208ENST00000437607 ZNF521Q96K83 1311 aa15.69■□□□□ 0.1
PTPRF-208ENST00000437607 EPS15P42566 896 aa15.69■□□□□ 0.1
PTPRF-208ENST00000437607 EIF6P56537 245 aaKnown RBP15.69■□□□□ 0.1
PTPRF-208ENST00000437607 CALD1Q05682 793 aaKnown RBP15.69■□□□□ 0.1
PTPRF-208ENST00000437607 FMR1Q06787 632 aaKnown RBP eCLIP15.69■□□□□ 0.1
PTPRF-208ENST00000437607 SLC10A5Q5PT55 438 aa15.69■□□□□ 0.1
PTPRF-208ENST00000437607 WWC1Q8IX03 1113 aa15.69■□□□□ 0.1
PTPRF-208ENST00000437607 LARGE2Q8N3Y3 721 aa15.69■□□□□ 0.1
PTPRF-208ENST00000437607 WBP1LQ9NX94 342 aa15.69■□□□□ 0.1
PTPRF-208ENST00000437607 TSPYL4Q9UJ04 414 aa15.69■□□□□ 0.1
PTPRF-208ENST00000437607 DUOX1Q9NRD9 1551 aa15.68■□□□□ 0.1
PTPRF-208ENST00000437607 GOLGA2Q08379 1002 aa15.68■□□□□ 0.1
PTPRF-208ENST00000437607 GRIPAP1Q4V328 841 aa15.68■□□□□ 0.1
PTPRF-208ENST00000437607 PPP1R42Q7Z4L9 355 aa15.68■□□□□ 0.1
PTPRF-208ENST00000437607 PRDM10Q9NQV6 1147 aa15.68■□□□□ 0.1
PTPRF-208ENST00000437607 ABCC4O15439 1325 aa15.68■□□□□ 0.1
PTPRF-208ENST00000437607 COL4A1P02462 1669 aa15.67■□□□□ 0.1
PTPRF-208ENST00000437607 EIF2S2P20042 333 aaKnown RBP15.67■□□□□ 0.1
PTPRF-208ENST00000437607 DEFB115Q30KQ5 88 aa15.67■□□□□ 0.1
PTPRF-208ENST00000437607 PARP10Q53GL7 1025 aa15.67■□□□□ 0.1
PTPRF-208ENST00000437607 NLRP3Q96P20 1036 aa15.67■□□□□ 0.1
PTPRF-208ENST00000437607 DDX21Q9NR30 783 aaKnown RBP eCLIP15.67■□□□□ 0.1
PTPRF-208ENST00000437607 ATP6V0A2Q9Y487 856 aa15.67■□□□□ 0.1
PTPRF-208ENST00000437607 CTCFP49711 727 aaPredicted RBP15.66■□□□□ 0.1
PTPRF-208ENST00000437607 AOC3Q16853 763 aa15.66■□□□□ 0.1
PTPRF-208ENST00000437607 WDR63Q8IWG1 891 aa15.66■□□□□ 0.1
PTPRF-208ENST00000437607 UTP14AQ9BVJ6 771 aaKnown RBP15.66■□□□□ 0.1
PTPRF-208ENST00000437607 TRIM35Q9UPQ4 493 aa15.66■□□□□ 0.1
PTPRF-208ENST00000437607 WDR33Q9C0J8 1336 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms