RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LAS1LQ9Y4W2 734 aaKnown RBP19.03■□□□□ 0.64
SDC1-204ENST00000429035 NTSR2O95665 410 aa19.02■□□□□ 0.64
SDC1-204ENST00000429035 AIMP1Q12904 312 aaKnown RBP19.02■□□□□ 0.64
SDC1-204ENST00000429035 WDR43Q15061 677 aaKnown RBP eCLIP19.02■□□□□ 0.64
SDC1-204ENST00000429035 PROSER3Q2NL68 480 aa19.02■□□□□ 0.64
SDC1-204ENST00000429035 PPP1R42Q7Z4L9 355 aa19.02■□□□□ 0.64
SDC1-204ENST00000429035 LDHDQ86WU2 507 aa19.02■□□□□ 0.64
SDC1-204ENST00000429035 TAF1DQ9H5J8 278 aaPredicted RBP19.02■□□□□ 0.64
SDC1-204ENST00000429035 CLEC11AQ9Y240 323 aa19.02■□□□□ 0.64
SDC1-204ENST00000429035 RNF123Q5XPI4 1314 aa19.01■□□□□ 0.63
SDC1-204ENST00000429035 PPEF1O14829 653 aaPredicted RBP19.01■□□□□ 0.63
SDC1-204ENST00000429035 HSPA1AP0DMV8 641 aaKnown RBP19.01■□□□□ 0.63
SDC1-204ENST00000429035 HSPA1BP0DMV9 641 aaKnown RBP19.01■□□□□ 0.63
SDC1-204ENST00000429035 SLC51AQ86UW1 340 aa19.01■□□□□ 0.63
SDC1-204ENST00000429035 JDP2Q8WYK2 163 aa19.01■□□□□ 0.63
SDC1-204ENST00000429035 RBM17Q96I25 401 aaKnown RBP19.01■□□□□ 0.63
SDC1-204ENST00000429035 L3MBTL3Q96JM7 780 aaPredicted RBP19.01■□□□□ 0.63
SDC1-204ENST00000429035 MKRN1Q9UHC7 482 aaKnown RBP19.01■□□□□ 0.63
SDC1-204ENST00000429035 HACL1Q9UJ83 578 aa19.01■□□□□ 0.63
SDC1-204ENST00000429035 PARP10Q53GL7 1025 aa19■□□□□ 0.63
SDC1-204ENST00000429035 ZNF34Q8IZ26 560 aa19■□□□□ 0.63
SDC1-204ENST00000429035 GJA3Q9Y6H8 435 aa19■□□□□ 0.63
SDC1-204ENST00000429035 SNED1Q8TER0 1413 aa19■□□□□ 0.63
SDC1-204ENST00000429035 COL4A5P29400 1685 aa18.99■□□□□ 0.63
SDC1-204ENST00000429035 EPHX2P34913 555 aa18.99■□□□□ 0.63
SDC1-204ENST00000429035 C3orf67Q6ZVT6 689 aa18.99■□□□□ 0.63
SDC1-204ENST00000429035 PSMD1Q99460 953 aa18.99■□□□□ 0.63
SDC1-204ENST00000429035 CREBZFQ9NS37 354 aa18.99■□□□□ 0.63
SDC1-204ENST00000429035 EIF6P56537 245 aaKnown RBP18.98■□□□□ 0.63
SDC1-204ENST00000429035 PDIA6Q15084 440 aa18.98■□□□□ 0.63
SDC1-204ENST00000429035 KRT24Q2M2I5 525 aa18.98■□□□□ 0.63
SDC1-204ENST00000429035 COL13A1Q5TAT6 717 aaPredicted RBP18.98■□□□□ 0.63
SDC1-204ENST00000429035 CC2D2BQ6DHV5 1058 aa18.98■□□□□ 0.63
SDC1-204ENST00000429035 LARGE2Q8N3Y3 721 aa18.98■□□□□ 0.63
SDC1-204ENST00000429035 XAGE3Q8WTP9 111 aa18.98■□□□□ 0.63
SDC1-204ENST00000429035 NLRP3Q96P20 1036 aa18.98■□□□□ 0.63
SDC1-204ENST00000429035 UTP14AQ9BVJ6 771 aaKnown RBP18.98■□□□□ 0.63
SDC1-204ENST00000429035 TMX4Q9H1E5 349 aaPredicted RBP18.98■□□□□ 0.63
SDC1-204ENST00000429035 ADAMTSL1Q8N6G6 1762 aa18.98■□□□□ 0.63
SDC1-204ENST00000429035 LRP10Q7Z4F1 713 aa18.97■□□□□ 0.63
SDC1-204ENST00000429035 ZNF428Q96B54 188 aa18.97■□□□□ 0.63
SDC1-204ENST00000429035 BABAM1Q9NWV8 329 aa18.97■□□□□ 0.63
SDC1-204ENST00000429035 FZD9O00144 591 aa18.96■□□□□ 0.63
SDC1-204ENST00000429035 HOXA10P31260 410 aaPredicted RBP18.96■□□□□ 0.63
SDC1-204ENST00000429035 COPS6Q7L5N1 327 aa18.96■□□□□ 0.63
SDC1-204ENST00000429035 RUNDC1Q96C34 613 aa18.96■□□□□ 0.63
SDC1-204ENST00000429035 CRAMP1Q96RY5 1269 aa18.96■□□□□ 0.63
SDC1-204ENST00000429035 LTBP1Q14766 1721 aa18.96■□□□□ 0.63
SDC1-204ENST00000429035 TAF1P21675 1872 aa18.96■□□□□ 0.63
SDC1-204ENST00000429035 PCNTO95613 3336 aa18.95■□□□□ 0.62
SDC1-204ENST00000429035 CAPN15O75808 1086 aa18.95■□□□□ 0.62
SDC1-204ENST00000429035 LMOD1P29536 600 aaPredicted RBP18.95■□□□□ 0.62
SDC1-204ENST00000429035 HSP90AB3PQ58FF7 597 aa18.95■□□□□ 0.62
SDC1-204ENST00000429035 NIM1KQ8IY84 436 aa18.95■□□□□ 0.62
SDC1-204ENST00000429035 GPC2Q8N158 579 aa18.95■□□□□ 0.62
SDC1-204ENST00000429035 ABCC4O15439 1325 aa18.95■□□□□ 0.62
SDC1-204ENST00000429035 PPIP5K2O43314 1243 aa18.94■□□□□ 0.62
SDC1-204ENST00000429035 TNS4Q8IZW8 715 aa18.94■□□□□ 0.62
SDC1-204ENST00000429035 CHPF2Q9P2E5 772 aa18.94■□□□□ 0.62
SDC1-204ENST00000429035 PASKQ96RG2 1323 aa18.94■□□□□ 0.62
SDC1-204ENST00000429035 HCLS1P14317 486 aaPredicted RBP18.93■□□□□ 0.62
SDC1-204ENST00000429035 AOC3Q16853 763 aa18.93■□□□□ 0.62
SDC1-204ENST00000429035 HDGFL1Q5TGJ6 251 aa18.93■□□□□ 0.62
SDC1-204ENST00000429035 MAP1SQ66K74 1059 aaPredicted RBP18.93■□□□□ 0.62
SDC1-204ENST00000429035 DDX60Q8IY21 1712 aaKnown RBP18.93■□□□□ 0.62
SDC1-204ENST00000429035 CNTNAP1P78357 1384 aa18.93■□□□□ 0.62
SDC1-204ENST00000429035 GRIPAP1Q4V328 841 aa18.92■□□□□ 0.62
SDC1-204ENST00000429035 PNMA8AQ86V59 439 aaPredicted RBP18.92■□□□□ 0.62
SDC1-204ENST00000429035 NLRP10Q86W26 655 aa18.92■□□□□ 0.62
SDC1-204ENST00000429035 DDX21Q9NR30 783 aaKnown RBP eCLIP18.92■□□□□ 0.62
SDC1-204ENST00000429035 TRMT112Q9UI30 125 aaKnown RBP18.92■□□□□ 0.62
SDC1-204ENST00000429035 TMEM88BA6NKF7 163 aa18.91■□□□□ 0.62
SDC1-204ENST00000429035 TRIM35Q9UPQ4 493 aa18.91■□□□□ 0.62
SDC1-204ENST00000429035 CHL1O00533 1208 aa18.9■□□□□ 0.62
SDC1-204ENST00000429035 CNTROBQ8N137 903 aa18.9■□□□□ 0.62
SDC1-204ENST00000429035 ADAMTS8Q9UP79 889 aa18.9■□□□□ 0.62
SDC1-204ENST00000429035 ATP6V0A2Q9Y487 856 aa18.9■□□□□ 0.62
SDC1-204ENST00000429035 SH3TC1Q8TE82 1336 aa18.9■□□□□ 0.62
SDC1-204ENST00000429035 TRPM7Q96QT4 1865 aa18.89■□□□□ 0.61
SDC1-204ENST00000429035 TCIRG1Q13488 830 aa18.89■□□□□ 0.61
SDC1-204ENST00000429035 DPP8Q6V1X1 898 aaPredicted RBP18.89■□□□□ 0.61
SDC1-204ENST00000429035 DDX46Q7L014 1031 aaKnown RBP18.89■□□□□ 0.61
SDC1-204ENST00000429035 ITGBL1O95965 494 aaPredicted RBP18.88■□□□□ 0.61
SDC1-204ENST00000429035 EPS15P42566 896 aa18.88■□□□□ 0.61
SDC1-204ENST00000429035 SCNN1DP51172 638 aa18.88■□□□□ 0.61
SDC1-204ENST00000429035 SLC10A5Q5PT55 438 aa18.88■□□□□ 0.61
SDC1-204ENST00000429035 SUPT20HQ8NEM7 779 aa18.88■□□□□ 0.61
SDC1-204ENST00000429035 ABT1Q9ULW3 272 aaKnown RBP18.88■□□□□ 0.61
SDC1-204ENST00000429035 LRRC37AA6NMS7 1700 aa18.87■□□□□ 0.61
SDC1-204ENST00000429035 ATP5J2-PTCD1G3V325 749 aa18.86■□□□□ 0.61
SDC1-204ENST00000429035 GRAPQ13588 217 aa18.86■□□□□ 0.61
SDC1-204ENST00000429035 RTL5Q5HYW3 569 aaPredicted RBP18.86■□□□□ 0.61
SDC1-204ENST00000429035 DUSP27Q5VZP5 1158 aa18.86■□□□□ 0.61
SDC1-204ENST00000429035 PAXIP1Q6ZW49 1069 aaPredicted RBP18.86■□□□□ 0.61
SDC1-204ENST00000429035 MPNDQ8N594 471 aa18.86■□□□□ 0.61
SDC1-204ENST00000429035 PLBD2Q8NHP8 589 aa18.86■□□□□ 0.61
SDC1-204ENST00000429035 GRAPLQ8TC17 118 aaPredicted RBP18.86■□□□□ 0.61
SDC1-204ENST00000429035 AIDAQ96BJ3 306 aa18.86■□□□□ 0.61
SDC1-204ENST00000429035 DBF4Q9UBU7 674 aaPredicted RBP18.86■□□□□ 0.61
SDC1-204ENST00000429035 HOXB7P09629 217 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms