RNA–Protein interactions for RNA: ENST00000415548.1

CCT3-208, Transcript of chaperonin containing TCP1 subunit 3, human

TSL 3

Gene CCT3, Length 513 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCT3-208	ENST00000415548	PPP1R42	Q7Z4L9	355 aa		10.83	□□□□□ -0.68
CCT3-208	ENST00000415548	PLBD2	Q8NHP8	589 aa		10.83	□□□□□ -0.68
CCT3-208	ENST00000415548	CNKSR1	Q969H4	720 aa		10.83	□□□□□ -0.68
CCT3-208	ENST00000415548	UTP14A	Q9BVJ6	771 aa	Known RBP	10.83	□□□□□ -0.68
CCT3-208	ENST00000415548	PHAX	Q9H814	394 aa	Known RBP	10.83	□□□□□ -0.68
CCT3-208	ENST00000415548	FANCI	Q9NVI1	1328 aa		10.83	□□□□□ -0.68
CCT3-208	ENST00000415548	TCERG1	O14776	1098 aa	Known RBP	10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	NPR1	P16066	1061 aa		10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	TWISTNB	Q3B726	338 aa	Predicted RBP	10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	CCDC30	Q5VVM6	783 aa		10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	PRPF40B	Q6NWY9	871 aa	Known RBP	10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	C3orf67	Q6ZVT6	689 aa		10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	NLRP10	Q86W26	655 aa		10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	ZNF526	Q8TF50	670 aa	Predicted RBP	10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	ZNF428	Q96B54	188 aa		10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	ARFGEF2	Q9Y6D5	1785 aa		10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	RIC1	Q4ADV7	1423 aa		10.82	□□□□□ -0.68
CCT3-208	ENST00000415548	SBF1	O95248	1867 aa		10.81	□□□□□ -0.68
CCT3-208	ENST00000415548	ATP5J2-PTCD1	G3V325	749 aa		10.81	□□□□□ -0.68
CCT3-208	ENST00000415548	CCER2	I3L3R5	266 aa		10.81	□□□□□ -0.68
CCT3-208	ENST00000415548	NFKBIE	O00221	500 aa		10.81	□□□□□ -0.68
CCT3-208	ENST00000415548	PRELP	P51888	382 aa		10.81	□□□□□ -0.68
CCT3-208	ENST00000415548	GOLGA2	Q08379	1002 aa		10.81	□□□□□ -0.68
CCT3-208	ENST00000415548	CHMP4A	Q9BY43	222 aa		10.81	□□□□□ -0.68
CCT3-208	ENST00000415548	RNF181	Q9P0P0	153 aa		10.81	□□□□□ -0.68
CCT3-208	ENST00000415548	EXOSC9	Q06265	439 aa	Known RBP	10.8	□□□□□ -0.68
CCT3-208	ENST00000415548	CRY2	Q49AN0	593 aa		10.8	□□□□□ -0.68
CCT3-208	ENST00000415548	RIC3	Q7Z5B4	369 aa		10.8	□□□□□ -0.68
CCT3-208	ENST00000415548	SYNE4	Q8N205	404 aa		10.8	□□□□□ -0.68
CCT3-208	ENST00000415548	ISCA1	Q9BUE6	129 aa		10.8	□□□□□ -0.68
CCT3-208	ENST00000415548	TRMT112	Q9UI30	125 aa	Known RBP	10.8	□□□□□ -0.68
CCT3-208	ENST00000415548	FER1L6	Q2WGJ9	1857 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	HCLS1	P14317	486 aa	Predicted RBP	10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	LMNB1	P20700	586 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	SLC10A5	Q5PT55	438 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	OLFM4	Q6UX06	510 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	C7orf43	Q8WVR3	580 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	RPGR	Q92834	1020 aa	Known RBP	10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	STK31	Q9BXU1	1019 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	RNF123	Q5XPI4	1314 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	SH3TC1	Q8TE82	1336 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	ZNF521	Q96K83	1311 aa		10.79	□□□□□ -0.68
CCT3-208	ENST00000415548	CCDC88A	Q3V6T2	1871 aa		10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	VAMP4	O75379	141 aa		10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	ALDH1B1	P30837	517 aa		10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	HOXA10	P31260	410 aa	Predicted RBP	10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	G2E3	Q7L622	706 aa		10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	RBM17	Q96I25	401 aa	Known RBP	10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	NLRP3	Q96P20	1036 aa		10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	MYD88	Q99836	296 aa		10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	MYH16	Q9H6N6	1097 aa		10.78	□□□□□ -0.68
CCT3-208	ENST00000415548	LAMB2	P55268	1798 aa		10.77	□□□□□ -0.68
CCT3-208	ENST00000415548	DDX58	O95786	925 aa	Known RBP	10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	SLC4A2	P04920	1241 aa		10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	TRIM28	Q13263	835 aa	Known RBP	10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	CCDC93	Q567U6	631 aa		10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	RTL5	Q5HYW3	569 aa	Predicted RBP	10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	SOGA3	Q5TF21	947 aa		10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	DIEXF	Q68CQ4	756 aa	Known RBP	10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	FAM89A	Q96GI7	184 aa		10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	TAOK3	Q9H2K8	898 aa		10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	MAP3K2	Q9Y2U5	619 aa		10.77	□□□□□ -0.69
CCT3-208	ENST00000415548	DDX60	Q8IY21	1712 aa	Known RBP	10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	PI4KAP2	A4QPH2	592 aa		10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	KSR2	Q6VAB6	950 aa		10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	SLC51A	Q86UW1	340 aa		10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	MIER1	Q8N108	512 aa		10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	PI4KAP1	Q8N8J0	262 aa		10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	CRAMP1	Q96RY5	1269 aa		10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	METTL22	Q9BUU2	404 aa	Predicted RBP	10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	ABCC4	O15439	1325 aa		10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	LTBP3	Q9NS15	1303 aa		10.76	□□□□□ -0.69
CCT3-208	ENST00000415548	TIAM2	Q8IVF5	1701 aa		10.75	□□□□□ -0.69
CCT3-208	ENST00000415548	PPEF1	O14829	653 aa	Predicted RBP	10.75	□□□□□ -0.69
CCT3-208	ENST00000415548	FLII	Q13045	1269 aa		10.75	□□□□□ -0.69
CCT3-208	ENST00000415548	DICER1	Q9UPY3	1922 aa	Known RBP	10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	CACNA1F	O60840	1977 aa		10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	IRS4	O14654	1257 aa	Predicted RBP	10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	IGKV5-2	P06315	115 aa		10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	RTKN2	Q8IZC4	609 aa		10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	CCDC191	Q8NCU4	936 aa		10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	JARID2	Q92833	1246 aa	Predicted RBP	10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	NMRK2	Q9NPI5	230 aa		10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	ZNF277	Q9NRM2	450 aa	Predicted RBP	10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	CWC25	Q9NXE8	425 aa	Predicted RBP	10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	SNED1	Q8TER0	1413 aa		10.74	□□□□□ -0.69
CCT3-208	ENST00000415548	TAF1	P21675	1872 aa		10.73	□□□□□ -0.69
CCT3-208	ENST00000415548		E9PSI1	815 aa		10.73	□□□□□ -0.69
CCT3-208	ENST00000415548	KIF3C	O14782	793 aa		10.73	□□□□□ -0.69
CCT3-208	ENST00000415548	PCCA	P05165	728 aa	Predicted RBP	10.73	□□□□□ -0.69
CCT3-208	ENST00000415548	C1QTNF8	P60827	252 aa		10.73	□□□□□ -0.69
CCT3-208	ENST00000415548	SLFN5	Q08AF3	891 aa		10.73	□□□□□ -0.69
CCT3-208	ENST00000415548	FKBP5	Q13451	457 aa	Predicted RBP	10.73	□□□□□ -0.69
CCT3-208	ENST00000415548	CC2D2B	Q6DHV5	1058 aa		10.73	□□□□□ -0.69
CCT3-208	ENST00000415548	DDX46	Q7L014	1031 aa	Known RBP	10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms