RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 MTMR6Q9Y217 621 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 MAP3K2Q9Y2U5 619 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 KCNQ3O43525 872 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 KDM4AO75164 1064 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 GIGYF1O75420 1035 aaPredicted RBP11.69□□□□□ -0.54
CD44-206ENST00000415148 ADCK5Q3MIX3 580 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 ZNF530Q6P9A1 599 aaPredicted RBP11.69□□□□□ -0.54
CD44-206ENST00000415148 CCDC171Q6TFL3 1326 aa11.69□□□□□ -0.54
CD44-206ENST00000415148 FER1L4A9Z1Z3 1794 aa11.68□□□□□ -0.54
CD44-206ENST00000415148 TPM3P06753 285 aa11.68□□□□□ -0.54
CD44-206ENST00000415148 DNM1Q05193 864 aaKnown RBP11.68□□□□□ -0.54
CD44-206ENST00000415148 ANKRD1Q15327 319 aa11.68□□□□□ -0.54
CD44-206ENST00000415148 PRPF40BQ6NWY9 871 aaKnown RBP11.68□□□□□ -0.54
CD44-206ENST00000415148 LINS1Q8NG48 757 aa11.68□□□□□ -0.54
CD44-206ENST00000415148 DDX58O95786 925 aaKnown RBP11.68□□□□□ -0.54
CD44-206ENST00000415148 C1orf141Q5JVX7 400 aa11.68□□□□□ -0.54
CD44-206ENST00000415148 C14orf37Q86TY3 774 aa11.68□□□□□ -0.54
CD44-206ENST00000415148 CCDC83Q8IWF9 413 aa11.68□□□□□ -0.54
CD44-206ENST00000415148 PDCP20941 246 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 RNF20Q5VTR2 975 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 FAM173BQ6P4H8 233 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 SPC24Q8NBT2 197 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 PRIMPOLQ96LW4 560 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 ELP1O95163 1332 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 G3BP1Q13283 466 aaKnown RBP eCLIP11.67□□□□□ -0.54
CD44-206ENST00000415148 ATP2B3Q16720 1220 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 TSGA10IPQ3SY00 556 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 CREB3L3Q68CJ9 461 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 AACSQ86V21 672 aa11.67□□□□□ -0.54
CD44-206ENST00000415148 ZHX1Q9UKY1 873 aaPredicted RBP11.67□□□□□ -0.54
CD44-206ENST00000415148 RBM8AQ9Y5S9 174 aaKnown RBP11.67□□□□□ -0.54
CD44-206ENST00000415148 RGPD2P0DJD1 1756 aa11.66□□□□□ -0.54
CD44-206ENST00000415148 GRM8O00222 908 aa11.66□□□□□ -0.54
CD44-206ENST00000415148 ANXA1P04083 346 aa11.66□□□□□ -0.54
CD44-206ENST00000415148 HMGN5P82970 282 aaKnown RBP11.66□□□□□ -0.54
CD44-206ENST00000415148 PSME1Q06323 249 aa11.66□□□□□ -0.54
CD44-206ENST00000415148 ME3Q16798 604 aa11.66□□□□□ -0.54
CD44-206ENST00000415148 MPRIPQ6WCQ1 1025 aa11.66□□□□□ -0.54
CD44-206ENST00000415148 NECAB1Q8N987 351 aa11.66□□□□□ -0.54
CD44-206ENST00000415148 CHMP3Q9Y3E7 222 aa11.66□□□□□ -0.54
CD44-206ENST00000415148 SIPA1L3O60292 1781 aaPredicted RBP11.66□□□□□ -0.54
CD44-206ENST00000415148 SASH1O94885 1247 aa11.65□□□□□ -0.54
CD44-206ENST00000415148 CCDC94Q9BW85 323 aaPredicted RBP11.65□□□□□ -0.54
CD44-206ENST00000415148 DDX21Q9NR30 783 aaKnown RBP eCLIP11.65□□□□□ -0.54
CD44-206ENST00000415148 SPTLC3Q9NUV7 552 aa11.65□□□□□ -0.54
CD44-206ENST00000415148 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.65□□□□□ -0.54
CD44-206ENST00000415148 ADAMTS7Q9UKP4 1686 aa11.65□□□□□ -0.54
CD44-206ENST00000415148 CAMTA1Q9Y6Y1 1673 aa11.65□□□□□ -0.54
CD44-206ENST00000415148 CBX1P83916 185 aa11.65□□□□□ -0.54
CD44-206ENST00000415148 HMG20BQ9P0W2 317 aa11.65□□□□□ -0.54
CD44-206ENST00000415148 SLC27A2O14975 620 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 CCDC192P0DO97 292 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 KRT85P78386 507 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 LARP1BQ659C4 914 aaKnown RBP11.64□□□□□ -0.55
CD44-206ENST00000415148 ARHGEF25Q86VW2 580 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 BCL2L12Q9HB09 334 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 PA2G4Q9UQ80 394 aaKnown RBP11.64□□□□□ -0.55
CD44-206ENST00000415148 SLIT3O75094 1523 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 KCNJ4P48050 445 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 NMIQ13287 307 aaPredicted RBP11.64□□□□□ -0.55
CD44-206ENST00000415148 EAF2Q96CJ1 260 aaPredicted RBP11.64□□□□□ -0.55
CD44-206ENST00000415148 TPCN1Q9ULQ1 816 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 JCADQ9P266 1359 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 MRC1P22897 1456 aa11.64□□□□□ -0.55
CD44-206ENST00000415148 ZSCAN20P17040 1043 aaPredicted RBP11.63□□□□□ -0.55
CD44-206ENST00000415148 CAMK4Q16566 473 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 CWF19L2Q2TBE0 894 aaKnown RBP11.63□□□□□ -0.55
CD44-206ENST00000415148 BLOC1S2Q6QNY1 142 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 FERMT3Q86UX7 667 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 SMAP1Q8IYB5 467 aaPredicted RBP11.63□□□□□ -0.55
CD44-206ENST00000415148 KIAA1524Q8TCG1 905 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 KAZALD1Q96I82 304 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 SUCLG2Q96I99 432 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 SCAND2PQ9GZW5 306 aaPredicted RBP11.63□□□□□ -0.55
CD44-206ENST00000415148 TAF6LQ9Y6J9 622 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 VPS37CA5D8V6 355 aaPredicted RBP11.63□□□□□ -0.55
CD44-206ENST00000415148 GOLGA6L6A8MZA4 724 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 LIG1P18858 919 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 RPS6KB1P23443 525 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 GTF2F1P35269 517 aaKnown RBP eCLIP11.63□□□□□ -0.55
CD44-206ENST00000415148 PROSER3Q2NL68 480 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 LARP1Q6PKG0 1096 aaKnown RBP11.63□□□□□ -0.55
CD44-206ENST00000415148 LRRC59Q96AG4 307 aaKnown RBP11.63□□□□□ -0.55
CD44-206ENST00000415148 TCEANC2Q96MN5 208 aa11.63□□□□□ -0.55
CD44-206ENST00000415148 BICC1Q9H694 974 aaKnown RBP11.63□□□□□ -0.55
CD44-206ENST00000415148 MED23Q9ULK4 1368 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 SPDYE4A6NLX3 237 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 RIOK3O14730 519 aaKnown RBP11.62□□□□□ -0.55
CD44-206ENST00000415148 GCP02774 474 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 KRT32Q14532 448 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 PPP4R3BQ5MIZ7 849 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 USPL1Q5W0Q7 1092 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 TTC6Q86TZ1 520 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 FAM227BQ96M60 508 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 NPHP4O75161 1426 aaPredicted RBP11.62□□□□□ -0.55
CD44-206ENST00000415148 RFX7Q2KHR2 1363 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 PXDNQ92626 1479 aa11.62□□□□□ -0.55
CD44-206ENST00000415148 ADAMTSL3P82987 1691 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 PTGS1P23219 599 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 NEXNQ0ZGT2 675 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms