RNA–Protein interactions for RNA: ENST00000414411.3

DDB1-202, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,904 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-202ENST00000414411 QSER1Q2KHR3 1735 aa12.54□□□□□ -0.4
DDB1-202ENST00000414411 USP42Q9H9J4 1324 aaKnown RBP12.54□□□□□ -0.4
DDB1-202ENST00000414411 ARFGEF2Q9Y6D5 1785 aa12.53□□□□□ -0.4
DDB1-202ENST00000414411 RFC4P35249 363 aa12.53□□□□□ -0.4
DDB1-202ENST00000414411 BEND3Q5T5X7 828 aa12.53□□□□□ -0.4
DDB1-202ENST00000414411 INTS3Q68E01 1043 aaKnown RBP12.53□□□□□ -0.4
DDB1-202ENST00000414411 TCIRG1Q13488 830 aa12.52□□□□□ -0.4
DDB1-202ENST00000414411 USPL1Q5W0Q7 1092 aa12.52□□□□□ -0.4
DDB1-202ENST00000414411 PANK1Q8TE04 598 aa12.52□□□□□ -0.4
DDB1-202ENST00000414411 SRP68Q9UHB9 627 aaKnown RBP12.52□□□□□ -0.4
DDB1-202ENST00000414411 SOCS7O14512 581 aa12.52□□□□□ -0.41
DDB1-202ENST00000414411 ZPR1O75312 459 aa12.52□□□□□ -0.41
DDB1-202ENST00000414411 IGKV5-2P06315 115 aa12.52□□□□□ -0.41
DDB1-202ENST00000414411 TRIM28Q13263 835 aaKnown RBP12.52□□□□□ -0.41
DDB1-202ENST00000414411 BCORQ6W2J9 1755 aa12.52□□□□□ -0.41
DDB1-202ENST00000414411 ATP10DQ9P241 1426 aa12.52□□□□□ -0.41
DDB1-202ENST00000414411 PXDNLA1KZ92 1463 aa12.52□□□□□ -0.41
DDB1-202ENST00000414411 SLC4A10Q6U841 1118 aa12.51□□□□□ -0.41
DDB1-202ENST00000414411 ZNF34Q8IZ26 560 aa12.51□□□□□ -0.41
DDB1-202ENST00000414411 TMEM57Q8N5G2 664 aa12.51□□□□□ -0.41
DDB1-202ENST00000414411 LINS1Q8NG48 757 aa12.51□□□□□ -0.41
DDB1-202ENST00000414411 ISCA1Q9BUE6 129 aa12.51□□□□□ -0.41
DDB1-202ENST00000414411 GYS1P13807 737 aa12.5□□□□□ -0.41
DDB1-202ENST00000414411 CCT4P50991 539 aaKnown RBP12.5□□□□□ -0.41
DDB1-202ENST00000414411 FTSJ3Q8IY81 847 aaKnown RBP12.5□□□□□ -0.41
DDB1-202ENST00000414411 IBTKQ9P2D0 1353 aaPredicted RBP12.5□□□□□ -0.41
DDB1-202ENST00000414411 SCN7AQ01118 1682 aa12.5□□□□□ -0.41
DDB1-202ENST00000414411 NEXNQ0ZGT2 675 aa12.5□□□□□ -0.41
DDB1-202ENST00000414411 HSP90AB3PQ58FF7 597 aa12.5□□□□□ -0.41
DDB1-202ENST00000414411 N4BP2Q86UW6 1770 aaPredicted RBP12.5□□□□□ -0.41
DDB1-202ENST00000414411 MYD88Q99836 296 aa12.5□□□□□ -0.41
DDB1-202ENST00000414411 PDGFDQ9GZP0 370 aaPredicted RBP12.5□□□□□ -0.41
DDB1-202ENST00000414411 NEURL1BA8MQ27 555 aa12.49□□□□□ -0.41
DDB1-202ENST00000414411 ATP5J2-PTCD1G3V325 749 aa12.49□□□□□ -0.41
DDB1-202ENST00000414411 ALDH1L1O75891 902 aa12.49□□□□□ -0.41
DDB1-202ENST00000414411 CWF19L2Q2TBE0 894 aaKnown RBP12.49□□□□□ -0.41
DDB1-202ENST00000414411 SRCIN1Q9C0H9 1055 aa12.49□□□□□ -0.41
DDB1-202ENST00000414411 ZNF652Q9Y2D9 606 aa12.49□□□□□ -0.41
DDB1-202ENST00000414411 COG6Q9Y2V7 657 aa12.49□□□□□ -0.41
DDB1-202ENST00000414411 ANKRD36CQ5JPF3 1778 aa12.49□□□□□ -0.41
DDB1-202ENST00000414411 MVPQ14764 893 aaKnown RBP12.49□□□□□ -0.41
DDB1-202ENST00000414411 UBN2Q6ZU65 1347 aa12.48□□□□□ -0.41
DDB1-202ENST00000414411 ZBTB7BO15156 539 aaPredicted RBP12.48□□□□□ -0.41
DDB1-202ENST00000414411 TM4SF1P30408 202 aa12.48□□□□□ -0.41
DDB1-202ENST00000414411 AAMPQ13685 434 aa12.48□□□□□ -0.41
DDB1-202ENST00000414411 GCKRQ14397 625 aa12.48□□□□□ -0.41
DDB1-202ENST00000414411 TBC1D9BQ66K14 1250 aa12.48□□□□□ -0.41
DDB1-202ENST00000414411 NLRP10Q86W26 655 aa12.48□□□□□ -0.41
DDB1-202ENST00000414411 CCDC191Q8NCU4 936 aa12.48□□□□□ -0.41
DDB1-202ENST00000414411 USP44Q9H0E7 712 aa12.48□□□□□ -0.41
DDB1-202ENST00000414411 NLGN1Q8N2Q7 840 aa12.47□□□□□ -0.41
DDB1-202ENST00000414411 ZBTB47Q9UFB7 747 aaPredicted RBP12.47□□□□□ -0.41
DDB1-202ENST00000414411 NIP7Q9Y221 180 aaKnown RBP eCLIP12.47□□□□□ -0.41
DDB1-202ENST00000414411 GPTP24298 496 aa12.47□□□□□ -0.41
DDB1-202ENST00000414411 NFIXQ14938 502 aa12.47□□□□□ -0.41
DDB1-202ENST00000414411 R3HDM1Q15032 1099 aaKnown RBP12.47□□□□□ -0.41
DDB1-202ENST00000414411 ITPRIPQ8IWB1 547 aa12.47□□□□□ -0.41
DDB1-202ENST00000414411 SLC16A10Q8TF71 515 aa12.47□□□□□ -0.41
DDB1-202ENST00000414411 H7C1W4 665 aa12.46□□□□□ -0.42
DDB1-202ENST00000414411 IGHDP01880 384 aa12.46□□□□□ -0.42
DDB1-202ENST00000414411 PARP10Q53GL7 1025 aa12.46□□□□□ -0.42
DDB1-202ENST00000414411 CWC25Q9NXE8 425 aaPredicted RBP12.46□□□□□ -0.42
DDB1-202ENST00000414411 DDX19BQ9UMR2 479 aa12.46□□□□□ -0.42
DDB1-202ENST00000414411 AFDNP55196 1824 aaKnown RBP12.46□□□□□ -0.42
DDB1-202ENST00000414411 UTYO14607 1347 aa12.45□□□□□ -0.42
DDB1-202ENST00000414411 FAM161AQ3B820 660 aa12.45□□□□□ -0.42
DDB1-202ENST00000414411 SUSD4Q5VX71 490 aa12.45□□□□□ -0.42
DDB1-202ENST00000414411 SETDB2Q96T68 719 aa12.45□□□□□ -0.42
DDB1-202ENST00000414411 CASZ1Q86V15 1759 aa12.45□□□□□ -0.42
DDB1-202ENST00000414411 NBPF7P0C2Y1 421 aaPredicted RBP12.45□□□□□ -0.42
DDB1-202ENST00000414411 CASP7P55210 303 aa12.45□□□□□ -0.42
DDB1-202ENST00000414411 BICDL1Q6ZP65 573 aa12.45□□□□□ -0.42
DDB1-202ENST00000414411 ZBTB40Q9NUA8 1239 aa12.45□□□□□ -0.42
DDB1-202ENST00000414411 GRM8O00222 908 aa12.44□□□□□ -0.42
DDB1-202ENST00000414411 C8orf34Q49A92 452 aa12.44□□□□□ -0.42
DDB1-202ENST00000414411 MEIS3Q99687 375 aa12.44□□□□□ -0.42
DDB1-202ENST00000414411 COL24A1Q17RW2 1714 aa12.43□□□□□ -0.42
DDB1-202ENST00000414411 NTSR2O95665 410 aa12.43□□□□□ -0.42
DDB1-202ENST00000414411 PCCAP05165 728 aaPredicted RBP12.43□□□□□ -0.42
DDB1-202ENST00000414411 RGS3P49796 1198 aa12.43□□□□□ -0.42
DDB1-202ENST00000414411 DDR1Q08345 913 aa12.43□□□□□ -0.42
DDB1-202ENST00000414411 ZBTB38Q8NAP3 1195 aaPredicted RBP12.43□□□□□ -0.42
DDB1-202ENST00000414411 C9orf78Q9NZ63 289 aaPredicted RBP12.43□□□□□ -0.42
DDB1-202ENST00000414411 PSDA5PKW4 1024 aaPredicted RBP12.43□□□□□ -0.42
DDB1-202ENST00000414411 POLRMTO00411 1230 aaKnown RBP12.43□□□□□ -0.42
DDB1-202ENST00000414411 PPP1R42Q7Z4L9 355 aa12.43□□□□□ -0.42
DDB1-202ENST00000414411 SYNE4Q8N205 404 aa12.43□□□□□ -0.42
DDB1-202ENST00000414411 FAM89AQ96GI7 184 aa12.43□□□□□ -0.42
DDB1-202ENST00000414411 UTP14AQ9BVJ6 771 aaKnown RBP12.43□□□□□ -0.42
DDB1-202ENST00000414411 TRMT112Q9UI30 125 aaKnown RBP12.43□□□□□ -0.42
DDB1-202ENST00000414411 CARMIL3Q8ND23 1372 aa12.42□□□□□ -0.42
DDB1-202ENST00000414411 GNAI3P08754 354 aa12.42□□□□□ -0.42
DDB1-202ENST00000414411 VASPP50552 380 aaPredicted RBP12.42□□□□□ -0.42
DDB1-202ENST00000414411 MSL1Q68DK7 614 aa12.42□□□□□ -0.42
DDB1-202ENST00000414411 UBE3BQ7Z3V4 1068 aa12.42□□□□□ -0.42
DDB1-202ENST00000414411 JARID2Q92833 1246 aaPredicted RBP12.42□□□□□ -0.42
DDB1-202ENST00000414411 KAZALD1Q96I82 304 aa12.42□□□□□ -0.42
DDB1-202ENST00000414411 CHMP4BQ9H444 224 aaKnown RBP12.42□□□□□ -0.42
DDB1-202ENST00000414411 SERPINB2P05120 415 aa12.41□□□□□ -0.42
DDB1-202ENST00000414411 MMP10P09238 476 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms