RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 CCDC93Q567U6 631 aa25.44■■□□□ 1.66
TSPAN4-209ENST00000409543 UTP14AQ9BVJ6 771 aaKnown RBP25.44■■□□□ 1.66
TSPAN4-209ENST00000409543 HYPKQ9NX55 129 aa25.44■■□□□ 1.66
TSPAN4-209ENST00000409543 TOMM70O94826 608 aa25.43■■□□□ 1.66
TSPAN4-209ENST00000409543 NCBP3Q53F19 620 aaKnown RBP25.43■■□□□ 1.66
TSPAN4-209ENST00000409543 RNF123Q5XPI4 1314 aa25.42■■□□□ 1.66
TSPAN4-209ENST00000409543 ANKRD36CQ5JPF3 1778 aa25.42■■□□□ 1.66
TSPAN4-209ENST00000409543 GLTPD2A6NH11 291 aa25.42■■□□□ 1.66
TSPAN4-209ENST00000409543 HOXA10P31260 410 aaPredicted RBP25.42■■□□□ 1.66
TSPAN4-209ENST00000409543 SLC10A5Q5PT55 438 aa25.42■■□□□ 1.66
TSPAN4-209ENST00000409543 NLRP10Q86W26 655 aa25.42■■□□□ 1.66
TSPAN4-209ENST00000409543 PLBD2Q8NHP8 589 aa25.42■■□□□ 1.66
TSPAN4-209ENST00000409543 TIAM2Q8IVF5 1701 aa25.41■■□□□ 1.66
TSPAN4-209ENST00000409543 ANKRD13DQ6ZTN6 518 aa25.41■■□□□ 1.66
TSPAN4-209ENST00000409543 WWC1Q8IX03 1113 aa25.41■■□□□ 1.66
TSPAN4-209ENST00000409543 RPGRQ92834 1020 aaKnown RBP25.41■■□□□ 1.66
TSPAN4-209ENST00000409543 DICER1Q9UPY3 1922 aaKnown RBP25.41■■□□□ 1.66
TSPAN4-209ENST00000409543 ELL2O00472 640 aaPredicted RBP25.4■■□□□ 1.66
TSPAN4-209ENST00000409543 RTKN2Q8IZC4 609 aa25.4■■□□□ 1.66
TSPAN4-209ENST00000409543 C8orf58Q8NAV2 365 aa25.4■■□□□ 1.66
TSPAN4-209ENST00000409543 NLRP3Q96P20 1036 aa25.4■■□□□ 1.66
TSPAN4-209ENST00000409543 RRAGCQ9HB90 399 aa25.4■■□□□ 1.66
TSPAN4-209ENST00000409543 CHMP4AQ9BY43 222 aa25.39■■□□□ 1.66
TSPAN4-209ENST00000409543 FKBP4Q02790 459 aaKnown RBP eCLIP25.38■■□□□ 1.652e-6■■■■□ 26.3
TSPAN4-209ENST00000409543 C16orf71Q8IYS4 520 aaPredicted RBP25.38■■□□□ 1.65
TSPAN4-209ENST00000409543 RBM17Q96I25 401 aaKnown RBP25.38■■□□□ 1.65
TSPAN4-209ENST00000409543 CRAMP1Q96RY5 1269 aa25.38■■□□□ 1.65
TSPAN4-209ENST00000409543 DPY19L2Q6NUT2 758 aa25.37■■□□□ 1.65
TSPAN4-209ENST00000409543 OLFM4Q6UX06 510 aa25.37■■□□□ 1.65
TSPAN4-209ENST00000409543 C3orf67Q6ZVT6 689 aa25.37■■□□□ 1.65
TSPAN4-209ENST00000409543 HSPA6P17066 643 aa25.36■■□□□ 1.65
TSPAN4-209ENST00000409543 CC2D2BQ6DHV5 1058 aa25.36■■□□□ 1.65
TSPAN4-209ENST00000409543 RBM46Q8TBY0 533 aaKnown RBP25.36■■□□□ 1.65
TSPAN4-209ENST00000409543 TRMT112Q9UI30 125 aaKnown RBP25.36■■□□□ 1.65
TSPAN4-209ENST00000409543 IL16Q14005 1332 aa25.36■■□□□ 1.65
TSPAN4-209ENST00000409543 ISCA1Q9BUE6 129 aa25.35■■□□□ 1.65
TSPAN4-209ENST00000409543 SH3TC1Q8TE82 1336 aa25.35■■□□□ 1.65
TSPAN4-209ENST00000409543 CCDC30Q5VVM6 783 aa25.34■■□□□ 1.65
TSPAN4-209ENST00000409543 TSR2Q969E8 191 aaKnown RBP25.34■■□□□ 1.65
TSPAN4-209ENST00000409543 VEGFAP15692 232 aaPredicted RBP25.33■■□□□ 1.65
TSPAN4-209ENST00000409543 GRIPAP1Q4V328 841 aa25.33■■□□□ 1.65
TSPAN4-209ENST00000409543 TSPYL6Q8N831 410 aa25.33■■□□□ 1.65
TSPAN4-209ENST00000409543 SNED1Q8TER0 1413 aa25.33■■□□□ 1.65
TSPAN4-209ENST00000409543 PHAXQ9H814 394 aaKnown RBP25.33■■□□□ 1.65
TSPAN4-209ENST00000409543 HCLS1P14317 486 aaPredicted RBP25.32■■□□□ 1.64
TSPAN4-209ENST00000409543 GOLGA2Q08379 1002 aa25.32■■□□□ 1.64
TSPAN4-209ENST00000409543 TRIM28Q13263 835 aaKnown RBP25.32■■□□□ 1.64
TSPAN4-209ENST00000409543 SYNE4Q8N205 404 aa25.32■■□□□ 1.64
TSPAN4-209ENST00000409543 ZNF277Q9NRM2 450 aaPredicted RBP25.32■■□□□ 1.64
TSPAN4-209ENST00000409543 ATP5J2-PTCD1G3V325 749 aa25.31■■□□□ 1.64
TSPAN4-209ENST00000409543 PPEF1O14829 653 aaPredicted RBP25.31■■□□□ 1.64
TSPAN4-209ENST00000409543 RIC3Q7Z5B4 369 aa25.31■■□□□ 1.64
TSPAN4-209ENST00000409543 PSMD1Q99460 953 aa25.31■■□□□ 1.64
TSPAN4-209ENST00000409543 WDR90Q96KV7 1748 aa25.29■■□□□ 1.64
TSPAN4-209ENST00000409543 IARSP41252 1262 aaKnown RBP25.29■■□□□ 1.64
TSPAN4-209ENST00000409543 FSTL1Q12841 308 aa25.29■■□□□ 1.64
TSPAN4-209ENST00000409543 WDR63Q8IWG1 891 aa25.29■■□□□ 1.64
TSPAN4-209ENST00000409543 LAMB2P55268 1798 aa25.28■■□□□ 1.64
TSPAN4-209ENST00000409543 POTECB2RU33 542 aa25.28■■□□□ 1.64
TSPAN4-209ENST00000409543 ABCC4O15439 1325 aa25.28■■□□□ 1.64
TSPAN4-209ENST00000409543 BBOX1O75936 387 aa25.27■■□□□ 1.64
TSPAN4-209ENST00000409543 TWISTNBQ3B726 338 aaPredicted RBP25.27■■□□□ 1.64
TSPAN4-209ENST00000409543 FAM9BQ8IZU0 186 aa25.27■■□□□ 1.64
TSPAN4-209ENST00000409543 ZNF428Q96B54 188 aa25.27■■□□□ 1.64
TSPAN4-209ENST00000409543 FAM89AQ96GI7 184 aa25.27■■□□□ 1.64
TSPAN4-209ENST00000409543 TMX4Q9H1E5 349 aaPredicted RBP25.27■■□□□ 1.64
TSPAN4-209ENST00000409543 ATP6V0A2Q9Y487 856 aa25.27■■□□□ 1.64
TSPAN4-209ENST00000409543 CEP350Q5VT06 3117 aa25.27■■□□□ 1.64
TSPAN4-209ENST00000409543 TCERG1O14776 1098 aaKnown RBP25.26■■□□□ 1.63
TSPAN4-209ENST00000409543 DDNO94850 711 aaPredicted RBP25.26■■□□□ 1.63
TSPAN4-209ENST00000409543 DDX58O95786 925 aaKnown RBP25.26■■□□□ 1.63
TSPAN4-209ENST00000409543 SALL2Q9Y467 1007 aaPredicted RBP25.26■■□□□ 1.63
TSPAN4-209ENST00000409543 DDX46Q7L014 1031 aaKnown RBP25.25■■□□□ 1.63
TSPAN4-209ENST00000409543 SMC1BQ8NDV3 1235 aa25.25■■□□□ 1.63
TSPAN4-209ENST00000409543 STK31Q9BXU1 1019 aa25.25■■□□□ 1.63
TSPAN4-209ENST00000409543 FANCIQ9NVI1 1328 aa25.24■■□□□ 1.63
TSPAN4-209ENST00000409543 APLP1P51693 650 aa25.24■■□□□ 1.63
TSPAN4-209ENST00000409543 MYD88Q99836 296 aa25.24■■□□□ 1.63
TSPAN4-209ENST00000409543 DDX60Q8IY21 1712 aaKnown RBP25.23■■□□□ 1.63
TSPAN4-209ENST00000409543 FZD9O00144 591 aa25.23■■□□□ 1.63
TSPAN4-209ENST00000409543 SF3B3Q15393 1217 aaKnown RBP25.23■■□□□ 1.63
TSPAN4-209ENST00000409543 SLC51AQ86UW1 340 aa25.23■■□□□ 1.63
TSPAN4-209ENST00000409543 METTL22Q9BUU2 404 aaPredicted RBP25.23■■□□□ 1.63
TSPAN4-209ENST00000409543 GRAPQ13588 217 aa25.22■■□□□ 1.63
TSPAN4-209ENST00000409543 SP8Q8IXZ3 490 aa25.22■■□□□ 1.63
TSPAN4-209ENST00000409543 ZBTB38Q8NAP3 1195 aaPredicted RBP25.22■■□□□ 1.63
TSPAN4-209ENST00000409543 CCDC191Q8NCU4 936 aa25.22■■□□□ 1.63
TSPAN4-209ENST00000409543 GRAPLQ8TC17 118 aaPredicted RBP25.22■■□□□ 1.63
TSPAN4-209ENST00000409543 JDP2Q8WYK2 163 aa25.22■■□□□ 1.63
TSPAN4-209ENST00000409543 L3MBTL3Q96JM7 780 aaPredicted RBP25.22■■□□□ 1.63
TSPAN4-209ENST00000409543 IRS4O14654 1257 aaPredicted RBP25.21■■□□□ 1.63
TSPAN4-209ENST00000409543 RTL5Q5HYW3 569 aaPredicted RBP25.21■■□□□ 1.63
TSPAN4-209ENST00000409543 KSR2Q6VAB6 950 aa25.21■■□□□ 1.63
TSPAN4-209ENST00000409543 ZNF541Q9H0D2 1346 aa25.2■■□□□ 1.62
TSPAN4-209ENST00000409543 TMC4Q7Z404 712 aa25.2■■□□□ 1.62
TSPAN4-209ENST00000409543 VPS33BQ9H267 617 aa25.2■■□□□ 1.62
TSPAN4-209ENST00000409543 MAP3K2Q9Y2U5 619 aa25.2■■□□□ 1.62
TSPAN4-209ENST00000409543 SLC4A2P04920 1241 aa25.19■■□□□ 1.62
TSPAN4-209ENST00000409543 HSP90B1P14625 803 aaKnown RBP25.19■■□□□ 1.62
TSPAN4-209ENST00000409543 LARGE2Q8N3Y3 721 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms