RNA–Protein interactions for RNA: ENST00000403997.2

SDF4-203, Transcript of stromal cell derived factor 4, humanhuman

TSL 3

Gene SDF4, Length 728 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-203ENST00000403997 TOMM70O94826 608 aa17.25■□□□□ 0.35
SDF4-203ENST00000403997 CRY2Q49AN0 593 aa17.25■□□□□ 0.35
SDF4-203ENST00000403997 HYPKQ9NX55 129 aa17.25■□□□□ 0.35
SDF4-203ENST00000403997 GLTPD2A6NH11 291 aa17.24■□□□□ 0.35
SDF4-203ENST00000403997 ANKRD13DQ6ZTN6 518 aa17.24■□□□□ 0.35
SDF4-203ENST00000403997 PLBD2Q8NHP8 589 aa17.24■□□□□ 0.35
SDF4-203ENST00000403997 NLRP3Q96P20 1036 aa17.24■□□□□ 0.35
SDF4-203ENST00000403997 CAPN15O75808 1086 aa17.23■□□□□ 0.35
SDF4-203ENST00000403997 DPY19L2Q6NUT2 758 aa17.23■□□□□ 0.35
SDF4-203ENST00000403997 OLFM4Q6UX06 510 aa17.23■□□□□ 0.35
SDF4-203ENST00000403997 NLRP10Q86W26 655 aa17.23■□□□□ 0.35
SDF4-203ENST00000403997 RTKN2Q8IZC4 609 aa17.23■□□□□ 0.35
SDF4-203ENST00000403997 C8orf58Q8NAV2 365 aa17.23■□□□□ 0.35
SDF4-203ENST00000403997 RBM17Q96I25 401 aaKnown RBP17.23■□□□□ 0.35
SDF4-203ENST00000403997 CACNA1SQ13698 1873 aa17.22■□□□□ 0.35
SDF4-203ENST00000403997 CCDC88AQ3V6T2 1871 aa17.22■□□□□ 0.35
SDF4-203ENST00000403997 HSPA6P17066 643 aa17.22■□□□□ 0.35
SDF4-203ENST00000403997 HOXA10P31260 410 aaPredicted RBP17.22■□□□□ 0.35
SDF4-203ENST00000403997 CCDC27Q2M243 656 aa17.22■□□□□ 0.35
SDF4-203ENST00000403997 SLC10A5Q5PT55 438 aa17.22■□□□□ 0.35
SDF4-203ENST00000403997 WWC1Q8IX03 1113 aa17.22■□□□□ 0.35
SDF4-203ENST00000403997 TRMT112Q9UI30 125 aaKnown RBP17.22■□□□□ 0.35
SDF4-203ENST00000403997 FER1L6Q2WGJ9 1857 aa17.21■□□□□ 0.35
SDF4-203ENST00000403997 FKBP4Q02790 459 aaKnown RBP eCLIP17.21■□□□□ 0.358e-7■■■■□ 22.5
SDF4-203ENST00000403997 C3orf67Q6ZVT6 689 aa17.21■□□□□ 0.35
SDF4-203ENST00000403997 ZNF428Q96B54 188 aa17.21■□□□□ 0.35
SDF4-203ENST00000403997 CRAMP1Q96RY5 1269 aa17.21■□□□□ 0.35
SDF4-203ENST00000403997 SALL2Q9Y467 1007 aaPredicted RBP17.21■□□□□ 0.35
SDF4-203ENST00000403997 HCLS1P14317 486 aaPredicted RBP17.2■□□□□ 0.34
SDF4-203ENST00000403997 VEGFAP15692 232 aaPredicted RBP17.2■□□□□ 0.34
SDF4-203ENST00000403997 SYNE4Q8N205 404 aa17.2■□□□□ 0.34
SDF4-203ENST00000403997 RBM46Q8TBY0 533 aaKnown RBP17.2■□□□□ 0.34
SDF4-203ENST00000403997 TSR2Q969E8 191 aaKnown RBP17.2■□□□□ 0.34
SDF4-203ENST00000403997 CHMP4AQ9BY43 222 aa17.2■□□□□ 0.34
SDF4-203ENST00000403997 ZNF277Q9NRM2 450 aaPredicted RBP17.2■□□□□ 0.34
SDF4-203ENST00000403997 RIC1Q4ADV7 1423 aa17.2■□□□□ 0.34
SDF4-203ENST00000403997 RNF123Q5XPI4 1314 aa17.2■□□□□ 0.34
SDF4-203ENST00000403997 ATP5J2-PTCD1G3V325 749 aa17.19■□□□□ 0.34
SDF4-203ENST00000403997 TCERG1O14776 1098 aaKnown RBP17.19■□□□□ 0.34
SDF4-203ENST00000403997 GOLGA2Q08379 1002 aa17.19■□□□□ 0.34
SDF4-203ENST00000403997 CCDC30Q5VVM6 783 aa17.19■□□□□ 0.34
SDF4-203ENST00000403997 CC2D2BQ6DHV5 1058 aa17.19■□□□□ 0.34
SDF4-203ENST00000403997 RIC3Q7Z5B4 369 aa17.19■□□□□ 0.34
SDF4-203ENST00000403997 TSPYL6Q8N831 410 aa17.19■□□□□ 0.34
SDF4-203ENST00000403997 PHAXQ9H814 394 aaKnown RBP17.19■□□□□ 0.34
SDF4-203ENST00000403997 ARFGEF2Q9Y6D5 1785 aa17.19■□□□□ 0.34
SDF4-203ENST00000403997 TNRC6CQ9HCJ0 1690 aaKnown RBP17.19■□□□□ 0.34
SDF4-203ENST00000403997 SH3TC1Q8TE82 1336 aa17.19■□□□□ 0.34
SDF4-203ENST00000403997 FAM9BQ8IZU0 186 aa17.18■□□□□ 0.34
SDF4-203ENST00000403997 ISCA1Q9BUE6 129 aa17.18■□□□□ 0.34
SDF4-203ENST00000403997 PPEF1O14829 653 aaPredicted RBP17.17■□□□□ 0.34
SDF4-203ENST00000403997 NCBP3Q53F19 620 aaKnown RBP17.17■□□□□ 0.34
SDF4-203ENST00000403997 TMX4Q9H1E5 349 aaPredicted RBP17.17■□□□□ 0.34
SDF4-203ENST00000403997 DDNO94850 711 aaPredicted RBP17.16■□□□□ 0.34
SDF4-203ENST00000403997 IARSP41252 1262 aaKnown RBP17.16■□□□□ 0.34
SDF4-203ENST00000403997 GRIPAP1Q4V328 841 aa17.16■□□□□ 0.34
SDF4-203ENST00000403997 FAM89AQ96GI7 184 aa17.16■□□□□ 0.34
SDF4-203ENST00000403997 PSMD1Q99460 953 aa17.16■□□□□ 0.34
SDF4-203ENST00000403997 IL16Q14005 1332 aa17.16■□□□□ 0.34
SDF4-203ENST00000403997 FSTL1Q12841 308 aa17.15■□□□□ 0.34
SDF4-203ENST00000403997 RTL5Q5HYW3 569 aaPredicted RBP17.15■□□□□ 0.34
SDF4-203ENST00000403997 DDX46Q7L014 1031 aaKnown RBP17.15■□□□□ 0.34
SDF4-203ENST00000403997 DICER1Q9UPY3 1922 aaKnown RBP17.15■□□□□ 0.34
SDF4-203ENST00000403997 TIAM2Q8IVF5 1701 aa17.14■□□□□ 0.33
SDF4-203ENST00000403997 POTECB2RU33 542 aa17.14■□□□□ 0.33
SDF4-203ENST00000403997 BBOX1O75936 387 aa17.14■□□□□ 0.33
SDF4-203ENST00000403997 DDX58O95786 925 aaKnown RBP17.14■□□□□ 0.33
SDF4-203ENST00000403997 TRIM28Q13263 835 aaKnown RBP17.14■□□□□ 0.33
SDF4-203ENST00000403997 TWISTNBQ3B726 338 aaPredicted RBP17.14■□□□□ 0.33
SDF4-203ENST00000403997 STK31Q9BXU1 1019 aa17.14■□□□□ 0.33
SDF4-203ENST00000403997 ABCC4O15439 1325 aa17.14■□□□□ 0.33
SDF4-203ENST00000403997 ANKRD36CQ5JPF3 1778 aa17.13■□□□□ 0.33
SDF4-203ENST00000403997 APLP1P51693 650 aa17.13■□□□□ 0.33
SDF4-203ENST00000403997 SLC51AQ86UW1 340 aa17.13■□□□□ 0.33
SDF4-203ENST00000403997 WDR63Q8IWG1 891 aa17.13■□□□□ 0.33
SDF4-203ENST00000403997 SMC1BQ8NDV3 1235 aa17.13■□□□□ 0.33
SDF4-203ENST00000403997 JDP2Q8WYK2 163 aa17.13■□□□□ 0.33
SDF4-203ENST00000403997 MYD88Q99836 296 aa17.13■□□□□ 0.33
SDF4-203ENST00000403997 ATP6V0A2Q9Y487 856 aa17.13■□□□□ 0.33
SDF4-203ENST00000403997 IRS4O14654 1257 aaPredicted RBP17.11■□□□□ 0.33
SDF4-203ENST00000403997 GRAPQ13588 217 aa17.11■□□□□ 0.33
SDF4-203ENST00000403997 SP8Q8IXZ3 490 aa17.11■□□□□ 0.33
SDF4-203ENST00000403997 GRAPLQ8TC17 118 aaPredicted RBP17.11■□□□□ 0.33
SDF4-203ENST00000403997 METTL22Q9BUU2 404 aaPredicted RBP17.11■□□□□ 0.33
SDF4-203ENST00000403997 ZNF541Q9H0D2 1346 aa17.11■□□□□ 0.33
SDF4-203ENST00000403997 SNED1Q8TER0 1413 aa17.11■□□□□ 0.33
SDF4-203ENST00000403997 FZD9O00144 591 aa17.1■□□□□ 0.33
SDF4-203ENST00000403997 SLC4A2P04920 1241 aa17.1■□□□□ 0.33
SDF4-203ENST00000403997 SF3B3Q15393 1217 aaKnown RBP17.1■□□□□ 0.33
SDF4-203ENST00000403997 LARGE2Q8N3Y3 721 aa17.1■□□□□ 0.33
SDF4-203ENST00000403997 ZBTB38Q8NAP3 1195 aaPredicted RBP17.1■□□□□ 0.33
SDF4-203ENST00000403997 CCDC191Q8NCU4 936 aa17.1■□□□□ 0.33
SDF4-203ENST00000403997 MAP3K2Q9Y2U5 619 aa17.1■□□□□ 0.33
SDF4-203ENST00000403997 FANCIQ9NVI1 1328 aa17.1■□□□□ 0.33
SDF4-203ENST00000403997 PI4KAP2A4QPH2 592 aa17.09■□□□□ 0.33
SDF4-203ENST00000403997 KSR2Q6VAB6 950 aa17.09■□□□□ 0.33
SDF4-203ENST00000403997 MPNDQ8N594 471 aa17.09■□□□□ 0.33
SDF4-203ENST00000403997 PI4KAP1Q8N8J0 262 aa17.09■□□□□ 0.33
SDF4-203ENST00000403997 CWC25Q9NXE8 425 aaPredicted RBP17.09■□□□□ 0.33
SDF4-203ENST00000403997 WDR90Q96KV7 1748 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms