RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PRR29P0C7W0 189 aa17.85■□□□□ 0.45
SKA1-202ENST00000398452 COL15A1P39059 1388 aa17.85■□□□□ 0.45
SKA1-202ENST00000398452 SYT17Q9BSW7 474 aa17.85■□□□□ 0.45
SKA1-202ENST00000398452 ATP10DQ9P241 1426 aa17.85■□□□□ 0.45
SKA1-202ENST00000398452 ERVV-1B6SEH8 477 aa17.84■□□□□ 0.45
SKA1-202ENST00000398452 ZPR1O75312 459 aa17.84■□□□□ 0.45
SKA1-202ENST00000398452 BEND3Q5T5X7 828 aa17.84■□□□□ 0.45
SKA1-202ENST00000398452 TBC1D2BQ9UPU7 963 aa17.84■□□□□ 0.45
SKA1-202ENST00000398452 UBTFL1P0CB47 393 aaPredicted RBP17.83■□□□□ 0.44
SKA1-202ENST00000398452 TRAPPC3LQ5T215 181 aa17.83■□□□□ 0.44
SKA1-202ENST00000398452 PNPLA7Q6ZV29 1317 aa17.82■□□□□ 0.44
SKA1-202ENST00000398452 ZBTB7BO15156 539 aaPredicted RBP17.82■□□□□ 0.44
SKA1-202ENST00000398452 RFC4P35249 363 aa17.82■□□□□ 0.44
SKA1-202ENST00000398452 GIGYF2Q6Y7W6 1299 aaKnown RBP17.82■□□□□ 0.44
SKA1-202ENST00000398452 SGIP1Q9BQI5 828 aa17.82■□□□□ 0.44
SKA1-202ENST00000398452 COL5A3P25940 1745 aaPredicted RBP17.81■□□□□ 0.44
SKA1-202ENST00000398452 PHF14O94880 888 aa17.81■□□□□ 0.44
SKA1-202ENST00000398452 TCIRG1Q13488 830 aa17.81■□□□□ 0.44
SKA1-202ENST00000398452 CWC25Q9NXE8 425 aaPredicted RBP17.81■□□□□ 0.44
SKA1-202ENST00000398452 NEURL1BA8MQ27 555 aa17.8■□□□□ 0.44
SKA1-202ENST00000398452 ATP5J2-PTCD1G3V325 749 aa17.8■□□□□ 0.44
SKA1-202ENST00000398452 GNAI2P04899 355 aa17.8■□□□□ 0.44
SKA1-202ENST00000398452 CWF19L2Q2TBE0 894 aaKnown RBP17.8■□□□□ 0.44
SKA1-202ENST00000398452 FLAD1Q8NFF5 587 aa17.8■□□□□ 0.44
SKA1-202ENST00000398452 ZBTB40Q9NUA8 1239 aa17.8■□□□□ 0.44
SKA1-202ENST00000398452 RGL2O15211 777 aa17.79■□□□□ 0.44
SKA1-202ENST00000398452 SSFA2P28290 1259 aa17.79■□□□□ 0.44
SKA1-202ENST00000398452 POLD1P28340 1107 aa17.79■□□□□ 0.44
SKA1-202ENST00000398452 PELP1Q8IZL8 1130 aaKnown RBP17.79■□□□□ 0.44
SKA1-202ENST00000398452 CCDC191Q8NCU4 936 aa17.79■□□□□ 0.44
SKA1-202ENST00000398452 MEIS3Q99687 375 aa17.79■□□□□ 0.44
SKA1-202ENST00000398452 C4BP0C0L5 1744 aa17.78■□□□□ 0.44
SKA1-202ENST00000398452 GRM8O00222 908 aa17.78■□□□□ 0.44
SKA1-202ENST00000398452 EVX2Q03828 476 aa17.78■□□□□ 0.44
SKA1-202ENST00000398452 MSL1Q68DK7 614 aa17.78■□□□□ 0.44
SKA1-202ENST00000398452 CLEC4GQ6UXB4 293 aa17.78■□□□□ 0.44
SKA1-202ENST00000398452 RWDD1Q9H446 243 aaPredicted RBP17.78■□□□□ 0.44
SKA1-202ENST00000398452 NARFQ9UHQ1 456 aa17.78■□□□□ 0.44
SKA1-202ENST00000398452 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.77■□□□□ 0.44
SKA1-202ENST00000398452 IGKV5-2P06315 115 aa17.77■□□□□ 0.44
SKA1-202ENST00000398452 GCKRQ14397 625 aa17.77■□□□□ 0.44
SKA1-202ENST00000398452 PARP10Q53GL7 1025 aa17.77■□□□□ 0.44
SKA1-202ENST00000398452 B4GALNT3Q6L9W6 998 aa17.77■□□□□ 0.44
SKA1-202ENST00000398452 COL23A1Q86Y22 540 aaPredicted RBP17.77■□□□□ 0.44
SKA1-202ENST00000398452 SLC16A10Q8TF71 515 aa17.77■□□□□ 0.44
SKA1-202ENST00000398452 HMMRO75330 724 aa17.76■□□□□ 0.43
SKA1-202ENST00000398452 CAMTA2O94983 1202 aa17.76■□□□□ 0.43
SKA1-202ENST00000398452 GPTP24298 496 aa17.76■□□□□ 0.43
SKA1-202ENST00000398452 TRIM28Q13263 835 aaKnown RBP17.76■□□□□ 0.43
SKA1-202ENST00000398452 HLFQ16534 295 aa17.76■□□□□ 0.43
SKA1-202ENST00000398452 RPAP2Q8IXW5 612 aaPredicted RBP17.76■□□□□ 0.43
SKA1-202ENST00000398452 ARHGEF1Q92888 912 aaKnown RBP17.76■□□□□ 0.43
SKA1-202ENST00000398452 USP44Q9H0E7 712 aa17.76■□□□□ 0.43
SKA1-202ENST00000398452 C1orf115Q9H7X2 142 aa17.76■□□□□ 0.43
SKA1-202ENST00000398452 TAF1LQ8IZX4 1826 aa17.76■□□□□ 0.43
SKA1-202ENST00000398452 TUBGCP6Q96RT7 1819 aa17.76■□□□□ 0.43
SKA1-202ENST00000398452 IBTKQ9P2D0 1353 aaPredicted RBP17.76■□□□□ 0.43
SKA1-202ENST00000398452 HSP90B1P14625 803 aaKnown RBP17.75■□□□□ 0.43
SKA1-202ENST00000398452 SMIM5Q71RC9 77 aa17.75■□□□□ 0.43
SKA1-202ENST00000398452 PPP1R42Q7Z4L9 355 aa17.75■□□□□ 0.43
SKA1-202ENST00000398452 ISCA1Q9BUE6 129 aa17.75■□□□□ 0.43
SKA1-202ENST00000398452 NIP7Q9Y221 180 aaKnown RBP eCLIP17.75■□□□□ 0.43
SKA1-202ENST00000398452 ARFGEF2Q9Y6D5 1785 aa17.75■□□□□ 0.43
SKA1-202ENST00000398452 MYH14Q7Z406 1995 aaKnown RBP17.75■□□□□ 0.43
SKA1-202ENST00000398452 GPR162Q16538 588 aa17.74■□□□□ 0.43
SKA1-202ENST00000398452 USPL1Q5W0Q7 1092 aa17.74■□□□□ 0.43
SKA1-202ENST00000398452 NPHP1O15259 732 aa17.73■□□□□ 0.43
SKA1-202ENST00000398452 NBPF7P0C2Y1 421 aaPredicted RBP17.73■□□□□ 0.43
SKA1-202ENST00000398452 GTF2E1P29083 439 aaPredicted RBP17.73■□□□□ 0.43
SKA1-202ENST00000398452 LRRFIP2Q9Y608 721 aaKnown RBP17.73■□□□□ 0.43
SKA1-202ENST00000398452 USP42Q9H9J4 1324 aaKnown RBP17.72■□□□□ 0.43
SKA1-202ENST00000398452 N4BP2Q86UW6 1770 aaPredicted RBP17.72■□□□□ 0.43
SKA1-202ENST00000398452 C19orf67A6NJJ6 358 aa17.72■□□□□ 0.43
SKA1-202ENST00000398452 CENPQQ7L2Z9 268 aaPredicted RBP17.72■□□□□ 0.43
SKA1-202ENST00000398452 UBE3BQ7Z3V4 1068 aa17.72■□□□□ 0.43
SKA1-202ENST00000398452 NLRP10Q86W26 655 aa17.72■□□□□ 0.43
SKA1-202ENST00000398452 ZNF34Q8IZ26 560 aa17.72■□□□□ 0.43
SKA1-202ENST00000398452 SETDB2Q96T68 719 aa17.72■□□□□ 0.43
SKA1-202ENST00000398452 ZBTB47Q9UFB7 747 aaPredicted RBP17.72■□□□□ 0.43
SKA1-202ENST00000398452 TRMT112Q9UI30 125 aaKnown RBP17.72■□□□□ 0.43
SKA1-202ENST00000398452 CHADLQ6NUI6 762 aa17.71■□□□□ 0.43
SKA1-202ENST00000398452 BICDL1Q6ZP65 573 aa17.71■□□□□ 0.43
SKA1-202ENST00000398452 ZBTB38Q8NAP3 1195 aaPredicted RBP17.71■□□□□ 0.43
SKA1-202ENST00000398452 NLGN2Q8NFZ4 835 aa17.71■□□□□ 0.43
SKA1-202ENST00000398452 UTP14AQ9BVJ6 771 aaKnown RBP17.71■□□□□ 0.43
SKA1-202ENST00000398452 NYXQ9GZU5 481 aa17.71■□□□□ 0.43
SKA1-202ENST00000398452 SRP68Q9UHB9 627 aaKnown RBP17.71■□□□□ 0.43
SKA1-202ENST00000398452 PCDHB15Q9Y5E8 787 aa17.71■□□□□ 0.43
SKA1-202ENST00000398452 UTYO14607 1347 aa17.71■□□□□ 0.42
SKA1-202ENST00000398452 PCCAP05165 728 aaPredicted RBP17.7■□□□□ 0.42
SKA1-202ENST00000398452 ANKRD44Q8N8A2 993 aa17.7■□□□□ 0.42
SKA1-202ENST00000398452 QSER1Q2KHR3 1735 aa17.69■□□□□ 0.42
SKA1-202ENST00000398452 FAM177BA6PVY3 158 aa17.69■□□□□ 0.42
SKA1-202ENST00000398452 H7C1W4 665 aa17.69■□□□□ 0.42
SKA1-202ENST00000398452 HDAC1Q13547 482 aaPredicted RBP17.69■□□□□ 0.42
SKA1-202ENST00000398452 RTL5Q5HYW3 569 aaPredicted RBP17.69■□□□□ 0.42
SKA1-202ENST00000398452 CEP85Q6P2H3 762 aa17.69■□□□□ 0.42
SKA1-202ENST00000398452 AFDNP55196 1824 aaKnown RBP17.69■□□□□ 0.42
SKA1-202ENST00000398452 SH3TC1Q8TE82 1336 aa17.69■□□□□ 0.42
SKA1-202ENST00000398452 ATP8B2P98198 1209 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms