RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 ZNF853P0CG23 659 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 RAB11FIP4Q86YS3 637 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 MYD88Q99836 296 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 ZMYND15Q9H091 742 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 CLIP2Q9UDT6 1046 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 SFPQP23246 707 aaKnown RBP eCLIP12.61□□□□□ -0.39
CCDC40-204ENST00000397545 ISM2Q6H9L7 571 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 TOM1L2Q6ZVM7 507 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 ZNF165P49910 485 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 AK7Q96M32 723 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 EYA1Q99502 592 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 CDK12Q9NYV4 1490 aaPredicted RBP12.61□□□□□ -0.39
CCDC40-204ENST00000397545 PLEKHG1Q9ULL1 1385 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 TRERF1Q96PN7 1200 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 ECHDC1Q9NTX5 307 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 CNPY2Q9Y2B0 182 aa12.61□□□□□ -0.39
CCDC40-204ENST00000397545 KIF20BQ96Q89 1820 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 KLHL10Q6JEL2 608 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 KIF6Q6ZMV9 814 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.6□□□□□ -0.39
CCDC40-204ENST00000397545 SH2B1Q9NRF2 756 aaPredicted RBP12.6□□□□□ -0.39
CCDC40-204ENST00000397545 CCDC69A6NI79 296 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 SMARCE1Q969G3 411 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 TMX1Q9H3N1 280 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 TBX22Q9Y458 520 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 URI1O94763 535 aaPredicted RBP12.6□□□□□ -0.39
CCDC40-204ENST00000397545 LRSAM1Q6UWE0 723 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 ANKRD44Q8N8A2 993 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 LRRC2Q9BYS8 371 aa12.6□□□□□ -0.39
CCDC40-204ENST00000397545 H0YHG0 523 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 SNRKQ9NRH2 765 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 KAT6BQ8WYB5 2073 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 USP6P35125 1406 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 CCP110O43303 1012 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 USP48Q86UV5 1035 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 ARHGAP45Q92619 1136 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 PTPRUQ92729 1446 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 OTUD7AQ8TE49 926 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-204ENST00000397545 REREQ9P2R6 1566 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 TDO2P48775 406 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 RHPN1Q8TCX5 695 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 TRIM34Q9BYJ4 488 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 CTNNA3Q9UI47 895 aa12.59□□□□□ -0.39
CCDC40-204ENST00000397545 PTPRCP08575 1304 aa12.58□□□□□ -0.39
CCDC40-204ENST00000397545 G2E3Q7L622 706 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 FSIP1Q8NA03 581 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 SNX21Q969T3 373 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 MPHOSPH8Q99549 860 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 CDC42BPGQ6DT37 1551 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 ATP5J2-PTCD1G3V325 749 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 EPS15P42566 896 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 RAB3GAP1Q15042 981 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 SIRT2Q8IXJ6 389 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 KIF18AQ8NI77 898 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 ABCF2Q9UG63 623 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 U3KPZ7 1027 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-204ENST00000397545 TXLNAP40222 546 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 HAND2P61296 217 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 UBE2HP62256 183 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 PPP4R3BQ5MIZ7 849 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 LARP1Q6PKG0 1096 aaKnown RBP12.58□□□□□ -0.4
CCDC40-204ENST00000397545 C8orf76Q96K31 380 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 ANO10Q9NW15 660 aa12.58□□□□□ -0.4
CCDC40-204ENST00000397545 MAGEC2Q9UBF1 373 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-204ENST00000397545 CHL1O00533 1208 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 POLR3DP05423 398 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-204ENST00000397545 IFIT1P09914 478 aaKnown RBP12.57□□□□□ -0.4
CCDC40-204ENST00000397545 FAM193AP78312 1265 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 ESYT1Q9BSJ8 1104 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 NACAP1Q9BZK3 213 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 CHRNA2Q15822 529 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 LEKR1Q6ZMV7 388 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 CABLES1Q8TDN4 633 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 IMMTQ16891 758 aaKnown RBP12.57□□□□□ -0.4
CCDC40-204ENST00000397545 MAP3K2Q9Y2U5 619 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 NRXN3Q9Y4C0 1643 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 A0A087WZG4 1122 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 DNM1Q05193 864 aaKnown RBP12.57□□□□□ -0.4
CCDC40-204ENST00000397545 PLEKHM2Q8IWE5 1019 aa12.57□□□□□ -0.4
CCDC40-204ENST00000397545 CWC15Q9P013 229 aaKnown RBP12.57□□□□□ -0.4
CCDC40-204ENST00000397545 DBF4Q9UBU7 674 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-204ENST00000397545 POLR3GO15318 223 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-204ENST00000397545 NOM1Q5C9Z4 860 aaKnown RBP12.56□□□□□ -0.4
CCDC40-204ENST00000397545 CPLX3Q8WVH0 158 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 ZHX3Q9H4I2 956 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 ABCC4O15439 1325 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 ZSCAN22P10073 491 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-204ENST00000397545 ERCC4Q92889 916 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-204ENST00000397545 UBAC1Q9BSL1 405 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 TCEAL9Q9UHQ7 104 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 TTC21AQ8NDW8 1320 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 GOLIM4O00461 696 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 ATP2B2Q01814 1243 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 IKQ13123 557 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-204ENST00000397545 CCDC186Q7Z3E2 898 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 TSPYL1Q9H0U9 437 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 ZNHIT6Q9NWK9 470 aaKnown RBP12.56□□□□□ -0.4
CCDC40-204ENST00000397545 FLT4P35916 1363 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 TECPR2O15040 1411 aa12.56□□□□□ -0.4
CCDC40-204ENST00000397545 ANKRD26Q9UPS8 1709 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms