RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ALDH1L1O75891 902 aa24.69■■□□□ 1.54
CLK3-202ENST00000395066 NECTIN1Q15223 517 aa24.69■■□□□ 1.54
CLK3-202ENST00000395066 EDC3Q96F86 508 aaKnown RBP24.69■■□□□ 1.54
CLK3-202ENST00000395066 KIAA2012Q0VF49 1180 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 ARHGEF25Q86VW2 580 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 EVI5LQ96CN4 794 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 GPATCH3Q96I76 525 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 ZSWIM6Q9HCJ5 1215 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 TPCN1Q9ULQ1 816 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 A0A0D9SFI3 127 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 CREB3L3Q68CJ9 461 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 FAM173BQ6P4H8 233 aa24.68■■□□□ 1.54
CLK3-202ENST00000395066 UBE2HP62256 183 aa24.67■■□□□ 1.54
CLK3-202ENST00000395066 AMOTQ4VCS5 1084 aa24.67■■□□□ 1.54
CLK3-202ENST00000395066 VPS53Q5VIR6 699 aa24.67■■□□□ 1.54
CLK3-202ENST00000395066 FERMT3Q86UX7 667 aa24.67■■□□□ 1.54
CLK3-202ENST00000395066 CHMP3Q9Y3E7 222 aa24.67■■□□□ 1.54
CLK3-202ENST00000395066 G3BP1Q13283 466 aaKnown RBP eCLIP24.66■■□□□ 1.54
CLK3-202ENST00000395066 NDUFB9Q9Y6M9 179 aa24.66■■□□□ 1.54
CLK3-202ENST00000395066 IGKV5-2P06315 115 aa24.66■■□□□ 1.54
CLK3-202ENST00000395066 PLCB2Q00722 1185 aa24.66■■□□□ 1.54
CLK3-202ENST00000395066 MTERF4Q7Z6M4 381 aaKnown RBP24.66■■□□□ 1.54
CLK3-202ENST00000395066 PDIA6Q15084 440 aa24.65■■□□□ 1.54
CLK3-202ENST00000395066 ERC1Q8IUD2 1116 aa24.65■■□□□ 1.54
CLK3-202ENST00000395066 LINS1Q8NG48 757 aa24.65■■□□□ 1.54
CLK3-202ENST00000395066 FAM184AQ8NB25 1140 aa24.65■■□□□ 1.54
CLK3-202ENST00000395066 CHGBP05060 677 aa24.65■■□□□ 1.54
CLK3-202ENST00000395066 EPHA10Q5JZY3 1008 aa24.65■■□□□ 1.54
CLK3-202ENST00000395066 RIC3Q7Z5B4 369 aa24.65■■□□□ 1.54
CLK3-202ENST00000395066 C17orf53Q8N3J3 647 aaPredicted RBP24.64■■□□□ 1.54
CLK3-202ENST00000395066 FSD1Q9BTV5 496 aa24.64■■□□□ 1.54
CLK3-202ENST00000395066 HEG1Q9ULI3 1381 aa24.64■■□□□ 1.53
CLK3-202ENST00000395066 ADCY5O95622 1261 aa24.64■■□□□ 1.53
CLK3-202ENST00000395066 ZKSCAN1P17029 563 aaPredicted RBP24.64■■□□□ 1.53
CLK3-202ENST00000395066 UVSSAQ2YD98 709 aa24.64■■□□□ 1.53
CLK3-202ENST00000395066 ANKLE2Q86XL3 938 aa24.64■■□□□ 1.53
CLK3-202ENST00000395066 CHMP4AQ9BY43 222 aa24.64■■□□□ 1.53
CLK3-202ENST00000395066 SLC27A2O14975 620 aa24.63■■□□□ 1.53
CLK3-202ENST00000395066 ZC3H6P61129 1189 aaKnown RBP24.63■■□□□ 1.53
CLK3-202ENST00000395066 ZNF589Q86UQ0 364 aaPredicted RBP24.63■■□□□ 1.53
CLK3-202ENST00000395066 CHD2O14647 1828 aaKnown RBP24.63■■□□□ 1.53
CLK3-202ENST00000395066 TTC12Q9H892 705 aaPredicted RBP24.63■■□□□ 1.53
CLK3-202ENST00000395066 CDC37L1Q7L3B6 337 aa24.62■■□□□ 1.53
CLK3-202ENST00000395066 MAP4K1Q92918 833 aa24.62■■□□□ 1.53
CLK3-202ENST00000395066 DDX21Q9NR30 783 aaKnown RBP eCLIP24.62■■□□□ 1.53
CLK3-202ENST00000395066 STK3Q13188 491 aa24.62■■□□□ 1.53
CLK3-202ENST00000395066 KCNB2Q92953 911 aa24.61■■□□□ 1.53
CLK3-202ENST00000395066 TM6SF1Q9BZW5 370 aa24.61■■□□□ 1.53
CLK3-202ENST00000395066 ATP6V1DQ9Y5K8 247 aa24.61■■□□□ 1.53
CLK3-202ENST00000395066 MYD88Q99836 296 aa24.6■■□□□ 1.53
CLK3-202ENST00000395066 ADGRL3Q9HAR2 1447 aa24.6■■□□□ 1.53
CLK3-202ENST00000395066 LARP1BQ659C4 914 aaKnown RBP24.6■■□□□ 1.53
CLK3-202ENST00000395066 XAGE3Q8WTP9 111 aa24.6■■□□□ 1.53
CLK3-202ENST00000395066 SH2B1Q9NRF2 756 aaPredicted RBP24.6■■□□□ 1.53
CLK3-202ENST00000395066 AP5Z1O43299 807 aa24.59■■□□□ 1.53
CLK3-202ENST00000395066 DNTTIP2Q5QJE6 756 aaKnown RBP24.59■■□□□ 1.53
CLK3-202ENST00000395066 ZSCAN31Q96LW9 406 aaPredicted RBP24.59■■□□□ 1.53
CLK3-202ENST00000395066 CCDC9Q9Y3X0 531 aaKnown RBP24.59■■□□□ 1.53
CLK3-202ENST00000395066 DDX58O95786 925 aaKnown RBP24.59■■□□□ 1.53
CLK3-202ENST00000395066 COPS6Q7L5N1 327 aa24.58■■□□□ 1.53
CLK3-202ENST00000395066 NFATC2IPQ8NCF5 419 aa24.58■■□□□ 1.53
CLK3-202ENST00000395066 ZNF790Q6PG37 636 aa24.58■■□□□ 1.52
CLK3-202ENST00000395066 TTC6Q86TZ1 520 aa24.58■■□□□ 1.52
CLK3-202ENST00000395066 NCAPD2Q15021 1401 aa24.58■■□□□ 1.52
CLK3-202ENST00000395066 NEURL1BA8MQ27 555 aa24.57■■□□□ 1.52
CLK3-202ENST00000395066 PIBF1Q8WXW3 757 aa24.57■■□□□ 1.52
CLK3-202ENST00000395066 FUCA2Q9BTY2 467 aa24.57■■□□□ 1.52
CLK3-202ENST00000395066 CAMK4Q16566 473 aa24.57■■□□□ 1.52
CLK3-202ENST00000395066 MYRIPQ8NFW9 859 aa24.57■■□□□ 1.52
CLK3-202ENST00000395066 UTYO14607 1347 aa24.57■■□□□ 1.52
CLK3-202ENST00000395066 NPHP4O75161 1426 aaPredicted RBP24.56■■□□□ 1.52
CLK3-202ENST00000395066 ARID3AQ99856 593 aa24.56■■□□□ 1.52
CLK3-202ENST00000395066 LETM1O95202 739 aaPredicted RBP24.56■■□□□ 1.52
CLK3-202ENST00000395066 BLOC1S2Q6QNY1 142 aa24.56■■□□□ 1.52
CLK3-202ENST00000395066 RGPD5Q99666 1765 aa24.56■■□□□ 1.52
CLK3-202ENST00000395066 CCDC129Q6ZRS4 1044 aa24.55■■□□□ 1.52
CLK3-202ENST00000395066 TFIP11Q9UBB9 837 aaKnown RBP24.55■■□□□ 1.52
CLK3-202ENST00000395066 TOB2Q14106 344 aaPredicted RBP24.55■■□□□ 1.52
CLK3-202ENST00000395066 GCKRQ14397 625 aa24.55■■□□□ 1.52
CLK3-202ENST00000395066 NLRP2Q9NX02 1062 aa24.55■■□□□ 1.52
CLK3-202ENST00000395066 LIG1P18858 919 aa24.54■■□□□ 1.52
CLK3-202ENST00000395066 KDM4AO75164 1064 aa24.54■■□□□ 1.52
CLK3-202ENST00000395066 NOLC1Q14978 699 aaKnown RBP eCLIP24.54■■□□□ 1.52
CLK3-202ENST00000395066 DDX17Q92841 729 aaKnown RBP24.54■■□□□ 1.52
CLK3-202ENST00000395066 ZNF496Q96IT1 587 aaPredicted RBP24.54■■□□□ 1.52
CLK3-202ENST00000395066 SEC62Q99442 399 aaKnown RBP24.54■■□□□ 1.52
CLK3-202ENST00000395066 USP16Q9Y5T5 823 aa24.54■■□□□ 1.52
CLK3-202ENST00000395066 COL15A1P39059 1388 aa24.54■■□□□ 1.52
CLK3-202ENST00000395066 LARP1Q6PKG0 1096 aaKnown RBP24.53■■□□□ 1.52
CLK3-202ENST00000395066 DBNLQ9UJU6 430 aaKnown RBP24.53■■□□□ 1.52
CLK3-202ENST00000395066 HDAC5Q9UQL6 1122 aa24.53■■□□□ 1.52
CLK3-202ENST00000395066 PHRF1Q9P1Y6 1649 aaKnown RBP24.53■■□□□ 1.52
CLK3-202ENST00000395066 ATP5J2-PTCD1G3V325 749 aa24.53■■□□□ 1.52
CLK3-202ENST00000395066 PTCD1O75127 700 aaKnown RBP24.53■■□□□ 1.52
CLK3-202ENST00000395066 RPS6KB1P23443 525 aa24.53■■□□□ 1.52
CLK3-202ENST00000395066 NEXNQ0ZGT2 675 aa24.53■■□□□ 1.52
CLK3-202ENST00000395066 KRT28Q7Z3Y7 464 aa24.53■■□□□ 1.52
CLK3-202ENST00000395066 PRIMPOLQ96LW4 560 aa24.53■■□□□ 1.52
CLK3-202ENST00000395066 C5P01031 1676 aa24.52■■□□□ 1.52
CLK3-202ENST00000395066 TFCP2Q12800 502 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms