RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 G3BP1Q13283 466 aaKnown RBP eCLIP22.39■■□□□ 1.18
CCDC88C-203ENST00000389856 PLEKHM2Q8IWE5 1019 aa22.39■■□□□ 1.18
CCDC88C-203ENST00000389856 KAZALD1Q96I82 304 aa22.39■■□□□ 1.18
CCDC88C-203ENST00000389856 CASP7P55210 303 aa22.39■■□□□ 1.17
CCDC88C-203ENST00000389856 SMARCA5O60264 1052 aaPredicted RBP22.38■■□□□ 1.17
CCDC88C-203ENST00000389856 ZBTB38Q8NAP3 1195 aaPredicted RBP22.38■■□□□ 1.17
CCDC88C-203ENST00000389856 RHPN1Q8TCX5 695 aa22.38■■□□□ 1.17
CCDC88C-203ENST00000389856 CCNL1Q9UK58 526 aaPredicted RBP22.38■■□□□ 1.17
CCDC88C-203ENST00000389856 BRWD3Q6RI45 1802 aa22.38■■□□□ 1.17
CCDC88C-203ENST00000389856 HSP90B1P14625 803 aaKnown RBP22.37■■□□□ 1.17
CCDC88C-203ENST00000389856 BECN1Q14457 450 aa22.37■■□□□ 1.17
CCDC88C-203ENST00000389856 OSBPL3Q9H4L5 887 aa22.37■■□□□ 1.17
CCDC88C-203ENST00000389856 AOX1Q06278 1338 aa22.36■■□□□ 1.17
CCDC88C-203ENST00000389856 CDHR2Q9BYE9 1310 aa22.36■■□□□ 1.17
CCDC88C-203ENST00000389856 ILDR2Q71H61 639 aa22.36■■□□□ 1.17
CCDC88C-203ENST00000389856 TBC1D2BQ9UPU7 963 aa22.36■■□□□ 1.17
CCDC88C-203ENST00000389856 MYH14Q7Z406 1995 aaKnown RBP22.36■■□□□ 1.17
CCDC88C-203ENST00000389856 PARP10Q53GL7 1025 aa22.35■■□□□ 1.17
CCDC88C-203ENST00000389856 TTC22Q5TAA0 569 aa22.35■■□□□ 1.17
CCDC88C-203ENST00000389856 NLRP10Q86W26 655 aa22.35■■□□□ 1.17
CCDC88C-203ENST00000389856 CLASRPQ8N2M8 674 aaKnown RBP22.35■■□□□ 1.17
CCDC88C-203ENST00000389856 LINC00116Q8NCU8 138 aa22.35■■□□□ 1.17
CCDC88C-203ENST00000389856 COPRSQ9NQ92 184 aa22.35■■□□□ 1.17
CCDC88C-203ENST00000389856 FAM182BQ5T319 152 aa22.35■■□□□ 1.17
CCDC88C-203ENST00000389856 MX1P20591 662 aa22.34■■□□□ 1.17
CCDC88C-203ENST00000389856 NBR1Q14596 966 aa22.34■■□□□ 1.17
CCDC88C-203ENST00000389856 HLFQ16534 295 aa22.34■■□□□ 1.17
CCDC88C-203ENST00000389856 PLA2G12BQ9BX93 195 aa22.34■■□□□ 1.17
CCDC88C-203ENST00000389856 BCORQ6W2J9 1755 aa22.34■■□□□ 1.17
CCDC88C-203ENST00000389856 RXRBP28702 533 aa22.33■■□□□ 1.17
CCDC88C-203ENST00000389856 CLEC4GQ6UXB4 293 aa22.33■■□□□ 1.17
CCDC88C-203ENST00000389856 ZNF34Q8IZ26 560 aa22.33■■□□□ 1.17
CCDC88C-203ENST00000389856 GPATCH3Q96I76 525 aa22.33■■□□□ 1.17
CCDC88C-203ENST00000389856 AK7Q96M32 723 aa22.33■■□□□ 1.17
CCDC88C-203ENST00000389856 TBC1D32Q96NH3 1257 aa22.33■■□□□ 1.17
CCDC88C-203ENST00000389856 BCL11AQ9H165 835 aa22.33■■□□□ 1.17
CCDC88C-203ENST00000389856 PDE1AP54750 535 aa22.32■■□□□ 1.16
CCDC88C-203ENST00000389856 FOXO4P98177 505 aa22.32■■□□□ 1.16
CCDC88C-203ENST00000389856 EPHA10Q5JZY3 1008 aa22.32■■□□□ 1.16
CCDC88C-203ENST00000389856 CASC1Q6TDU7 716 aa22.32■■□□□ 1.16
CCDC88C-203ENST00000389856 LMBR1LQ6UX01 489 aa22.32■■□□□ 1.16
CCDC88C-203ENST00000389856 C16orf71Q8IYS4 520 aaPredicted RBP22.32■■□□□ 1.16
CCDC88C-203ENST00000389856 STAP2Q9UGK3 403 aa22.32■■□□□ 1.16
CCDC88C-203ENST00000389856 TAF1LQ8IZX4 1826 aa22.32■■□□□ 1.16
CCDC88C-203ENST00000389856 RPS6KA4O75676 772 aa22.31■■□□□ 1.16
CCDC88C-203ENST00000389856 CAMTA2O94983 1202 aa22.31■■□□□ 1.16
CCDC88C-203ENST00000389856 GPTP24298 496 aa22.31■■□□□ 1.16
CCDC88C-203ENST00000389856 CHMP3Q9Y3E7 222 aa22.31■■□□□ 1.16
CCDC88C-203ENST00000389856 SLC27A3Q5K4L6 730 aa22.31■■□□□ 1.16
CCDC88C-203ENST00000389856 JARID2Q92833 1246 aaPredicted RBP22.31■■□□□ 1.16
CCDC88C-203ENST00000389856 TRMT112Q9UI30 125 aaKnown RBP22.31■■□□□ 1.16
CCDC88C-203ENST00000389856 CDC45O75419 566 aa22.3■■□□□ 1.16
CCDC88C-203ENST00000389856 PTF1AQ7RTS3 328 aa22.3■■□□□ 1.16
CCDC88C-203ENST00000389856 IL1RAPL2Q9NP60 686 aa22.3■■□□□ 1.16
CCDC88C-203ENST00000389856 RTCBQ9Y3I0 505 aaKnown RBP22.3■■□□□ 1.16
CCDC88C-203ENST00000389856 FBXO3Q9UK99 471 aa22.29■■□□□ 1.16
CCDC88C-203ENST00000389856 PA2G4Q9UQ80 394 aaKnown RBP22.29■■□□□ 1.16
CCDC88C-203ENST00000389856 SALL3Q9BXA9 1300 aa22.29■■□□□ 1.16
CCDC88C-203ENST00000389856 SCN7AQ01118 1682 aa22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 SEC24BO95487 1268 aa22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 IFIT2P09913 472 aaKnown RBP22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 TTC41PQ6P2S7 1318 aa22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 MYH3P11055 1940 aa22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 ERC2O15083 957 aa22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 C4BP0C0L5 1744 aa22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 RFX5P48382 616 aaPredicted RBP22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 CCDC57Q2TAC2 916 aa22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 OTUD7AQ8TE49 926 aaPredicted RBP22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 FAM89AQ96GI7 184 aa22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 UTP14AQ9BVJ6 771 aaKnown RBP22.28■■□□□ 1.16
CCDC88C-203ENST00000389856 GNPATO15228 680 aa22.27■■□□□ 1.16
CCDC88C-203ENST00000389856 PTPN12Q05209 780 aaKnown RBP22.27■■□□□ 1.16
CCDC88C-203ENST00000389856 SH3TC1Q8TE82 1336 aa22.27■■□□□ 1.15
CCDC88C-203ENST00000389856 ZPR1O75312 459 aa22.26■■□□□ 1.15
CCDC88C-203ENST00000389856 SIL1Q9H173 461 aa22.26■■□□□ 1.15
CCDC88C-203ENST00000389856 NARFQ9UHQ1 456 aa22.26■■□□□ 1.15
CCDC88C-203ENST00000389856 USP42Q9H9J4 1324 aaKnown RBP22.26■■□□□ 1.15
CCDC88C-203ENST00000389856 IRS4O14654 1257 aaPredicted RBP22.25■■□□□ 1.15
CCDC88C-203ENST00000389856 PDE8AO60658 829 aa22.25■■□□□ 1.15
CCDC88C-203ENST00000389856 CIAO1O76071 339 aa22.25■■□□□ 1.15
CCDC88C-203ENST00000389856 GSPT1P15170 499 aaKnown RBP22.25■■□□□ 1.15
CCDC88C-203ENST00000389856 ADRA2BP18089 450 aa22.25■■□□□ 1.15
CCDC88C-203ENST00000389856 NIP7Q9Y221 180 aaKnown RBP eCLIP22.25■■□□□ 1.15
CCDC88C-203ENST00000389856 CSF1RP07333 972 aa22.24■■□□□ 1.15
CCDC88C-203ENST00000389856 IL15P40933 162 aaPredicted RBP22.24■■□□□ 1.15
CCDC88C-203ENST00000389856 TAF7LQ5H9L4 462 aa22.24■■□□□ 1.15
CCDC88C-203ENST00000389856 TRIM37O94972 964 aa22.24■■□□□ 1.15
CCDC88C-203ENST00000389856 IFIT5Q13325 482 aaKnown RBP22.24■■□□□ 1.15
CCDC88C-203ENST00000389856 AACSQ86V21 672 aa22.24■■□□□ 1.15
CCDC88C-203ENST00000389856 UBN2Q6ZU65 1347 aa22.24■■□□□ 1.15
CCDC88C-203ENST00000389856 GLRX3O76003 335 aaKnown RBP22.23■■□□□ 1.15
CCDC88C-203ENST00000389856 CTSWP56202 376 aa22.23■■□□□ 1.15
CCDC88C-203ENST00000389856 NUTM1Q86Y26 1132 aa22.23■■□□□ 1.15
CCDC88C-203ENST00000389856 LAMB2P55268 1798 aa22.22■■□□□ 1.15
CCDC88C-203ENST00000389856 SASH1O94885 1247 aa22.22■■□□□ 1.15
CCDC88C-203ENST00000389856 SDSP20132 328 aa22.22■■□□□ 1.15
CCDC88C-203ENST00000389856 ECHDC1Q9NTX5 307 aa22.22■■□□□ 1.15
CCDC88C-203ENST00000389856 EYA2O00167 538 aa22.21■■□□□ 1.15
CCDC88C-203ENST00000389856 KCNQ4P56696 695 aa22.21■■□□□ 1.15
CCDC88C-203ENST00000389856 TRAPPC3LQ5T215 181 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms