RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CCDC191Q8NCU4 936 aa12.83□□□□□ -0.36
VPS53-202ENST00000389040 ISCA1Q9BUE6 129 aa12.83□□□□□ -0.36
VPS53-202ENST00000389040 COL24A1Q17RW2 1714 aa12.83□□□□□ -0.36
VPS53-202ENST00000389040 G2E3Q7L622 706 aa12.82□□□□□ -0.36
VPS53-202ENST00000389040 DNAAF4Q8WXU2 420 aa12.82□□□□□ -0.36
VPS53-202ENST00000389040 API5Q9BZZ5 524 aaKnown RBP12.82□□□□□ -0.36
VPS53-202ENST00000389040 PPP1R1BQ9UD71 204 aaPredicted RBP12.82□□□□□ -0.36
VPS53-202ENST00000389040 MAP3K2Q9Y2U5 619 aa12.82□□□□□ -0.36
VPS53-202ENST00000389040 C4AP0C0L4 1744 aa12.82□□□□□ -0.36
VPS53-202ENST00000389040 DDR1Q08345 913 aa12.82□□□□□ -0.36
VPS53-202ENST00000389040 NBPF5PQ86XG9 351 aaPredicted RBP12.82□□□□□ -0.36
VPS53-202ENST00000389040 LINS1Q8NG48 757 aa12.82□□□□□ -0.36
VPS53-202ENST00000389040 BACH2Q9BYV9 841 aa12.82□□□□□ -0.36
VPS53-202ENST00000389040 RTN4Q9NQC3 1192 aaKnown RBP12.82□□□□□ -0.36
VPS53-202ENST00000389040 TNNQ9UQP3 1299 aa12.82□□□□□ -0.36
VPS53-202ENST00000389040 SCN7AQ01118 1682 aa12.81□□□□□ -0.36
VPS53-202ENST00000389040 TGFB2P61812 414 aa12.81□□□□□ -0.36
VPS53-202ENST00000389040 CNBD1Q8NA66 436 aa12.81□□□□□ -0.36
VPS53-202ENST00000389040 UTP14AQ9BVJ6 771 aaKnown RBP12.81□□□□□ -0.36
VPS53-202ENST00000389040 ADCY9O60503 1353 aa12.81□□□□□ -0.36
VPS53-202ENST00000389040 LRP5O75197 1615 aa12.8□□□□□ -0.36
VPS53-202ENST00000389040 IGHDP01880 384 aa12.8□□□□□ -0.36
VPS53-202ENST00000389040 ANP32AP39687 249 aaKnown RBP12.8□□□□□ -0.36
VPS53-202ENST00000389040 ST5P78524 1137 aa12.8□□□□□ -0.36
VPS53-202ENST00000389040 BICDL1Q6ZP65 573 aa12.8□□□□□ -0.36
VPS53-202ENST00000389040 NLRP10Q86W26 655 aa12.8□□□□□ -0.36
VPS53-202ENST00000389040 FTSJ3Q8IY81 847 aaKnown RBP12.8□□□□□ -0.36
VPS53-202ENST00000389040 BRIP1Q9BX63 1249 aa12.8□□□□□ -0.36
VPS53-202ENST00000389040 CACNA1FO60840 1977 aa12.8□□□□□ -0.36
VPS53-202ENST00000389040 ALDH1L1O75891 902 aa12.8□□□□□ -0.36
VPS53-202ENST00000389040 MVPQ14764 893 aaKnown RBP12.8□□□□□ -0.36
VPS53-202ENST00000389040 DZIP1LQ8IYY4 767 aaKnown RBP12.8□□□□□ -0.36
VPS53-202ENST00000389040 NPHP1O15259 732 aa12.79□□□□□ -0.36
VPS53-202ENST00000389040 GTF2E1P29083 439 aaPredicted RBP12.79□□□□□ -0.36
VPS53-202ENST00000389040 PDE6BP35913 854 aa12.79□□□□□ -0.36
VPS53-202ENST00000389040 SLC10A5Q5PT55 438 aa12.79□□□□□ -0.36
VPS53-202ENST00000389040 CWC25Q9NXE8 425 aaPredicted RBP12.79□□□□□ -0.36
VPS53-202ENST00000389040 NOB1Q9ULX3 412 aaKnown RBP12.79□□□□□ -0.36
VPS53-202ENST00000389040 BCORQ6W2J9 1755 aa12.79□□□□□ -0.36
VPS53-202ENST00000389040 UBN2Q6ZU65 1347 aa12.79□□□□□ -0.36
VPS53-202ENST00000389040 ZBTB38Q8NAP3 1195 aaPredicted RBP12.78□□□□□ -0.36
VPS53-202ENST00000389040 MYD88Q99836 296 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 ANP32EQ9BTT0 268 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 RIC1Q4ADV7 1423 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 SH3TC1Q8TE82 1336 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 KLRG2A4D1S0 409 aaPredicted RBP12.78□□□□□ -0.36
VPS53-202ENST00000389040 TRIM27P14373 513 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 GPTP24298 496 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 CCT4P50991 539 aaKnown RBP12.78□□□□□ -0.36
VPS53-202ENST00000389040 BEND3Q5T5X7 828 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 SUSD4Q5VX71 490 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 PRR5LQ6MZQ0 368 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 ATF7IPQ6VMQ6 1270 aa12.78□□□□□ -0.36
VPS53-202ENST00000389040 TRMT112Q9UI30 125 aaKnown RBP12.78□□□□□ -0.36
VPS53-202ENST00000389040 C10orf71Q711Q0 1435 aa12.77□□□□□ -0.37
VPS53-202ENST00000389040 NEURL1BA8MQ27 555 aa12.77□□□□□ -0.37
VPS53-202ENST00000389040 NTSR2O95665 410 aa12.77□□□□□ -0.37
VPS53-202ENST00000389040 SRCIN1Q9C0H9 1055 aa12.77□□□□□ -0.37
VPS53-202ENST00000389040 HDAC5Q9UQL6 1122 aa12.77□□□□□ -0.37
VPS53-202ENST00000389040 PCCAP05165 728 aaPredicted RBP12.76□□□□□ -0.37
VPS53-202ENST00000389040 IGKV5-2P06315 115 aa12.76□□□□□ -0.37
VPS53-202ENST00000389040 GCKRQ14397 625 aa12.76□□□□□ -0.37
VPS53-202ENST00000389040 PCDHB15Q9Y5E8 787 aa12.76□□□□□ -0.37
VPS53-202ENST00000389040 PXDNLA1KZ92 1463 aa12.76□□□□□ -0.37
VPS53-202ENST00000389040 ATP5J2-PTCD1G3V325 749 aa12.76□□□□□ -0.37
VPS53-202ENST00000389040 SYT17Q9BSW7 474 aa12.76□□□□□ -0.37
VPS53-202ENST00000389040 FHDC1Q9C0D6 1143 aaPredicted RBP12.76□□□□□ -0.37
VPS53-202ENST00000389040 RGS3P49796 1198 aa12.75□□□□□ -0.37
VPS53-202ENST00000389040 NLRP3Q96P20 1036 aa12.75□□□□□ -0.37
VPS53-202ENST00000389040 CDHR2Q9BYE9 1310 aa12.75□□□□□ -0.37
VPS53-202ENST00000389040 F6X3S4 739 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 H0YIN7 160 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 H7C1W4 665 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 INTS3Q68E01 1043 aaKnown RBP12.74□□□□□ -0.37
VPS53-202ENST00000389040 SLC4A10Q6U841 1118 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 IPO9Q96P70 1041 aaKnown RBP12.74□□□□□ -0.37
VPS53-202ENST00000389040 DDX19BQ9UMR2 479 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 SRCAPQ6ZRS2 3230 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 NRXN2Q9P2S2 1712 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 CRY2Q49AN0 593 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 ERICH6Q7L0X2 663 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 ITPRIPQ8IWB1 547 aa12.74□□□□□ -0.37
VPS53-202ENST00000389040 RWDD1Q9H446 243 aaPredicted RBP12.74□□□□□ -0.37
VPS53-202ENST00000389040 UTYO14607 1347 aa12.73□□□□□ -0.37
VPS53-202ENST00000389040 ABCC4O15439 1325 aa12.73□□□□□ -0.37
VPS53-202ENST00000389040 GRM8O00222 908 aa12.73□□□□□ -0.37
VPS53-202ENST00000389040 CWF19L2Q2TBE0 894 aaKnown RBP12.73□□□□□ -0.37
VPS53-202ENST00000389040 FAM161AQ3B820 660 aa12.73□□□□□ -0.37
VPS53-202ENST00000389040 ERFEQ4G0M1 354 aa12.73□□□□□ -0.37
VPS53-202ENST00000389040 PLA2G12BQ9BX93 195 aa12.73□□□□□ -0.37
VPS53-202ENST00000389040 NUP98P52948 1817 aa12.73□□□□□ -0.37
VPS53-202ENST00000389040 ALDH1B1P30837 517 aa12.72□□□□□ -0.37
VPS53-202ENST00000389040 SF3B3Q15393 1217 aaKnown RBP12.72□□□□□ -0.37
VPS53-202ENST00000389040 STYK1Q6J9G0 422 aa12.72□□□□□ -0.37
VPS53-202ENST00000389040 CHMP4BQ9H444 224 aaKnown RBP12.72□□□□□ -0.37
VPS53-202ENST00000389040 C9orf78Q9NZ63 289 aaPredicted RBP12.72□□□□□ -0.37
VPS53-202ENST00000389040 IRS4O14654 1257 aaPredicted RBP12.72□□□□□ -0.37
VPS53-202ENST00000389040 PDE8AO60658 829 aa12.72□□□□□ -0.37
VPS53-202ENST00000389040 SRGNP10124 158 aa12.72□□□□□ -0.37
VPS53-202ENST00000389040 NPR1P16066 1061 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms