RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 TAF1LQ8IZX4 1826 aa33.31■■■□□ 2.92
MSX1-201ENST00000382723 C4BP0C0L5 1744 aa33.31■■■□□ 2.92
MSX1-201ENST00000382723 TXNRD1Q16881 649 aa33.31■■■□□ 2.92
MSX1-201ENST00000382723 AMIGO3Q86WK7 504 aa33.31■■■□□ 2.92
MSX1-201ENST00000382723 FAM89AQ96GI7 184 aa33.31■■■□□ 2.92
MSX1-201ENST00000382723 SURF6O75683 361 aaKnown RBP33.3■■■□□ 2.92
MSX1-201ENST00000382723 UBN2Q6ZU65 1347 aa33.29■■■□□ 2.92
MSX1-201ENST00000382723 SMARCA5O60264 1052 aaPredicted RBP33.29■■■□□ 2.92
MSX1-201ENST00000382723 PCCAP05165 728 aaPredicted RBP33.29■■■□□ 2.92
MSX1-201ENST00000382723 PROM2Q8N271 834 aa33.29■■■□□ 2.92
MSX1-201ENST00000382723 ZBTB38Q8NAP3 1195 aaPredicted RBP33.29■■■□□ 2.92
MSX1-201ENST00000382723 ZNF652Q9Y2D9 606 aa33.29■■■□□ 2.92
MSX1-201ENST00000382723 NUP98P52948 1817 aa33.29■■■□□ 2.92
MSX1-201ENST00000382723 PHF14O94880 888 aa33.28■■■□□ 2.92
MSX1-201ENST00000382723 TRMT112Q9UI30 125 aaKnown RBP33.27■■■□□ 2.92
MSX1-201ENST00000382723 ANKRD36CQ5JPF3 1778 aa33.27■■■□□ 2.92
MSX1-201ENST00000382723 PLSCR1O15162 318 aa33.26■■■□□ 2.92
MSX1-201ENST00000382723 FOXO4P98177 505 aa33.26■■■□□ 2.92
MSX1-201ENST00000382723 RABL6Q3YEC7 729 aaPredicted RBP33.26■■■□□ 2.91
MSX1-201ENST00000382723 LMBR1LQ6UX01 489 aa33.26■■■□□ 2.91
MSX1-201ENST00000382723 SYNE4Q8N205 404 aa33.26■■■□□ 2.91
MSX1-201ENST00000382723 ARHGEF1Q92888 912 aaKnown RBP33.26■■■□□ 2.91
MSX1-201ENST00000382723 SRP68Q9UHB9 627 aaKnown RBP33.26■■■□□ 2.91
MSX1-201ENST00000382723 PA2G4Q9UQ80 394 aaKnown RBP33.26■■■□□ 2.91
MSX1-201ENST00000382723 NIP7Q9Y221 180 aaKnown RBP eCLIP33.26■■■□□ 2.91
MSX1-201ENST00000382723 NARFQ9UHQ1 456 aa33.25■■■□□ 2.91
MSX1-201ENST00000382723 FAM177BA6PVY3 158 aa33.24■■■□□ 2.91
MSX1-201ENST00000382723 USPL1Q5W0Q7 1092 aa33.24■■■□□ 2.91
MSX1-201ENST00000382723 CLEC4GQ6UXB4 293 aa33.24■■■□□ 2.91
MSX1-201ENST00000382723 CHMP3Q9Y3E7 222 aa33.24■■■□□ 2.91
MSX1-201ENST00000382723 ZPR1O75312 459 aa33.24■■■□□ 2.91
MSX1-201ENST00000382723 TRAPPC3LQ5T215 181 aa33.24■■■□□ 2.91
MSX1-201ENST00000382723 LRRCC1Q9C099 1032 aa33.24■■■□□ 2.91
MSX1-201ENST00000382723 SUSD4Q5VX71 490 aa33.23■■■□□ 2.91
MSX1-201ENST00000382723 C16orf71Q8IYS4 520 aaPredicted RBP33.22■■■□□ 2.91
MSX1-201ENST00000382723 OS9Q13438 667 aaPredicted RBP33.22■■■□□ 2.91
MSX1-201ENST00000382723 ILDR1Q86SU0 546 aaPredicted RBP33.22■■■□□ 2.91
MSX1-201ENST00000382723 RFC4P35249 363 aa33.21■■■□□ 2.91
MSX1-201ENST00000382723 PARP10Q53GL7 1025 aa33.21■■■□□ 2.91
MSX1-201ENST00000382723 KLHDC4Q8TBB5 520 aa33.21■■■□□ 2.91
MSX1-201ENST00000382723 BCL2L12Q9HB09 334 aa33.21■■■□□ 2.91
MSX1-201ENST00000382723 NOP58Q9Y2X3 529 aaKnown RBP33.21■■■□□ 2.91
MSX1-201ENST00000382723 BCORQ6W2J9 1755 aa33.21■■■□□ 2.91
MSX1-201ENST00000382723 RAB11FIP3O75154 756 aa33.2■■■□□ 2.91
MSX1-201ENST00000382723 HSP90AB4PQ58FF6 505 aa33.2■■■□□ 2.9
MSX1-201ENST00000382723 CDHR2Q9BYE9 1310 aa33.19■■■□□ 2.9
MSX1-201ENST00000382723 BICDL1Q6ZP65 573 aa33.19■■■□□ 2.9
MSX1-201ENST00000382723 UTP14AQ9BVJ6 771 aaKnown RBP33.19■■■□□ 2.9
MSX1-201ENST00000382723 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.18■■■□□ 2.9
MSX1-201ENST00000382723 IRS4O14654 1257 aaPredicted RBP33.18■■■□□ 2.9
MSX1-201ENST00000382723 SIL1Q9H173 461 aa33.18■■■□□ 2.9
MSX1-201ENST00000382723 TSHZ2Q9NRE2 1034 aa33.18■■■□□ 2.9
MSX1-201ENST00000382723 TBC1D9BQ66K14 1250 aa33.17■■■□□ 2.9
MSX1-201ENST00000382723 OTUD7AQ8TE49 926 aaPredicted RBP33.17■■■□□ 2.9
MSX1-201ENST00000382723 SCN7AQ01118 1682 aa33.16■■■□□ 2.9
MSX1-201ENST00000382723 RFX5P48382 616 aaPredicted RBP33.16■■■□□ 2.9
MSX1-201ENST00000382723 RHPN1Q8TCX5 695 aa33.16■■■□□ 2.9
MSX1-201ENST00000382723 PLA2G12BQ9BX93 195 aa33.16■■■□□ 2.9
MSX1-201ENST00000382723 IL1RAPL2Q9NP60 686 aa33.16■■■□□ 2.9
MSX1-201ENST00000382723 TNS1Q9HBL0 1735 aaKnown RBP33.16■■■□□ 2.9
MSX1-201ENST00000382723 RGL2O15211 777 aa33.16■■■□□ 2.9
MSX1-201ENST00000382723 USP42Q9H9J4 1324 aaKnown RBP33.15■■■□□ 2.9
MSX1-201ENST00000382723 ADRA2BP18089 450 aa33.15■■■□□ 2.9
MSX1-201ENST00000382723 G3BP1Q13283 466 aaKnown RBP eCLIP33.15■■■□□ 2.9
MSX1-201ENST00000382723 KIF1BPQ96EK5 621 aa33.15■■■□□ 2.9
MSX1-201ENST00000382723 CCDC85AQ96PX6 553 aaPredicted RBP33.15■■■□□ 2.9
MSX1-201ENST00000382723 SH3TC1Q8TE82 1336 aa33.15■■■□□ 2.9
MSX1-201ENST00000382723 HMGB2P26583 209 aaKnown RBP33.14■■■□□ 2.9
MSX1-201ENST00000382723 NTSR2O95665 410 aa33.14■■■□□ 2.9
MSX1-201ENST00000382723 PTPN12Q05209 780 aaKnown RBP33.14■■■□□ 2.9
MSX1-201ENST00000382723 PLEKHM2Q8IWE5 1019 aa33.14■■■□□ 2.9
MSX1-201ENST00000382723 COPRSQ9NQ92 184 aa33.13■■■□□ 2.89
MSX1-201ENST00000382723 SSFA2P28290 1259 aa33.12■■■□□ 2.89
MSX1-201ENST00000382723 NUTM1Q86Y26 1132 aa33.12■■■□□ 2.89
MSX1-201ENST00000382723 HCLS1P14317 486 aaPredicted RBP33.11■■■□□ 2.89
MSX1-201ENST00000382723 ERC1Q8IUD2 1116 aa33.11■■■□□ 2.89
MSX1-201ENST00000382723 PDE8AO60658 829 aa33.1■■■□□ 2.89
MSX1-201ENST00000382723 C4AP0C0L4 1744 aa33.1■■■□□ 2.89
MSX1-201ENST00000382723 CTSWP56202 376 aa33.1■■■□□ 2.89
MSX1-201ENST00000382723 ZNF827Q17R98 1081 aa33.1■■■□□ 2.89
MSX1-201ENST00000382723 SETDB2Q96T68 719 aa33.1■■■□□ 2.89
MSX1-201ENST00000382723 CSF1RP07333 972 aa33.1■■■□□ 2.89
MSX1-201ENST00000382723 FAM161AQ3B820 660 aa33.1■■■□□ 2.89
MSX1-201ENST00000382723 TFCP2L1Q9NZI6 479 aa33.1■■■□□ 2.89
MSX1-201ENST00000382723 UBR3Q6ZT12 1888 aa33.09■■■□□ 2.89
MSX1-201ENST00000382723 CCDC57Q2TAC2 916 aa33.08■■■□□ 2.89
MSX1-201ENST00000382723 TTLL11Q8NHH1 800 aa33.08■■■□□ 2.89
MSX1-201ENST00000382723 EN1Q05925 392 aaPredicted RBP33.08■■■□□ 2.89
MSX1-201ENST00000382723 ZNF594Q96JF6 807 aaPredicted RBP33.08■■■□□ 2.89
MSX1-201ENST00000382723 SASH1O94885 1247 aa33.07■■■□□ 2.88
MSX1-201ENST00000382723 AKT1S1Q96B36 256 aa33.07■■■□□ 2.88
MSX1-201ENST00000382723 EZH2Q15910 746 aaKnown RBP33.06■■■□□ 2.88
MSX1-201ENST00000382723 ERFEQ4G0M1 354 aa33.05■■■□□ 2.88
MSX1-201ENST00000382723 GREM2Q9H772 168 aa33.05■■■□□ 2.88
MSX1-201ENST00000382723 IFIT5Q13325 482 aaKnown RBP33.04■■■□□ 2.88
MSX1-201ENST00000382723 BACH2Q9BYV9 841 aa33.04■■■□□ 2.88
MSX1-201ENST00000382723 GTF2E1P29083 439 aaPredicted RBP33.04■■■□□ 2.88
MSX1-201ENST00000382723 SF3B2Q13435 895 aaKnown RBP33.04■■■□□ 2.88
MSX1-201ENST00000382723 C8orf34Q49A92 452 aa33.04■■■□□ 2.88
MSX1-201ENST00000382723 CAMKK2Q96RR4 588 aa33.04■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms