RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 MINDY4BA8MYZ0 360 aa16.78■□□□□ 0.28
SHROOM1-203ENST00000378679 CCDC152Q4G0S7 254 aa16.78■□□□□ 0.28
SHROOM1-203ENST00000378679 UBAC1Q9BSL1 405 aa16.78■□□□□ 0.28
SHROOM1-203ENST00000378679 CDCA7Q9BWT1 371 aaPredicted RBP16.78■□□□□ 0.28
SHROOM1-203ENST00000378679 CCDC69A6NI79 296 aa16.77■□□□□ 0.28
SHROOM1-203ENST00000378679 IRS4O14654 1257 aaPredicted RBP16.77■□□□□ 0.28
SHROOM1-203ENST00000378679 KRT85P78386 507 aa16.77■□□□□ 0.28
SHROOM1-203ENST00000378679 ANKARQ7Z5J8 1434 aa16.77■□□□□ 0.27
SHROOM1-203ENST00000378679 TFCP2Q12800 502 aa16.77■□□□□ 0.27
SHROOM1-203ENST00000378679 GCKRQ14397 625 aa16.77■□□□□ 0.27
SHROOM1-203ENST00000378679 TRIM22Q8IYM9 498 aa16.77■□□□□ 0.27
SHROOM1-203ENST00000378679 HMGB2P26583 209 aaKnown RBP16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 FAM98CQ17RN3 349 aaKnown RBP16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 HELBQ8NG08 1087 aaPredicted RBP16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 SETDB2Q96T68 719 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 TULP4Q9NRJ4 1543 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 KIF24Q5T7B8 1368 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 ERVV-2B6SEH9 535 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 ZNF213O14771 459 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 SSFA2P28290 1259 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 NASPP49321 788 aaPredicted RBP16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 STK38Q15208 465 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 SUCLG2Q96I99 432 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 HAND2P61296 217 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 IQSEC3Q9UPP2 1182 aaPredicted RBP16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 NEXMIFQ5QGS0 1516 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 TTC41PQ6P2S7 1318 aa16.76■□□□□ 0.27
SHROOM1-203ENST00000378679 ESPNB1AK53 854 aa16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 BRINP3Q76B58 766 aa16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 RPGRQ92834 1020 aaKnown RBP16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 BRMS1Q9HCU9 246 aa16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 ARHGEF40Q8TER5 1519 aa16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 TIMM10P62072 90 aa16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 TPD52L1Q16890 204 aaPredicted RBP16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 TCEANC2Q96MN5 208 aa16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 RTL1A6NKG5 1358 aa16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 UTP14AQ9BVJ6 771 aaKnown RBP16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 SH2B1Q9NRF2 756 aaPredicted RBP16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 PTPRMP28827 1452 aa16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 CLTCQ00610 1675 aaKnown RBP16.75■□□□□ 0.27
SHROOM1-203ENST00000378679 PES1O00541 588 aaKnown RBP16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 CLSTN1O94985 981 aa16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 ATP2B2Q01814 1243 aa16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 NLRP3Q96P20 1036 aa16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 AXIN2Q9Y2T1 843 aa16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 CHMLP26374 656 aa16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 CCDC191Q8NCU4 936 aa16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 KINO60870 393 aaKnown RBP16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 PROSER3Q2NL68 480 aa16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 ZNF396Q96N95 335 aaPredicted RBP16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 GRPEL1Q9HAV7 217 aa16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 RBM8AQ9Y5S9 174 aaKnown RBP16.74■□□□□ 0.27
SHROOM1-203ENST00000378679 DIP2BQ9P265 1576 aa16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 ANKRD18AQ8IVF6 992 aa16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 TNPO1Q92973 898 aaKnown RBP16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 RBM5P52756 815 aaKnown RBP eCLIP16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 IKQ13123 557 aaPredicted RBP16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 ZMYND15Q9H091 742 aa16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 C6orf229H3BNL8 230 aa16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 TTF1Q15361 905 aaPredicted RBP16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 DZIP1Q86YF9 867 aaKnown RBP16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 CARD10Q9BWT7 1032 aa16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 PNPLA6Q8IY17 1366 aa16.73■□□□□ 0.27
SHROOM1-203ENST00000378679 HMGB1P09429 215 aaKnown RBP16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 ME1P48163 572 aa16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 ADGRL3Q9HAR2 1447 aa16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 BRPF1P55201 1214 aaPredicted RBP16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 TMX3Q96JJ7 454 aa16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 HOOK1Q9UJC3 728 aaKnown RBP16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 ADAMTS13Q76LX8 1427 aa16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 PRAMEF22A3QJZ6 481 aa16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 UQCRFS1P1P0C7P4 283 aa16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 RTCBQ9Y3I0 505 aaKnown RBP16.72■□□□□ 0.27
SHROOM1-203ENST00000378679 NMIQ13287 307 aaPredicted RBP16.71■□□□□ 0.27
SHROOM1-203ENST00000378679 NEK1Q96PY6 1258 aa16.71■□□□□ 0.27
SHROOM1-203ENST00000378679 WDR17Q8IZU2 1322 aa16.71■□□□□ 0.27
SHROOM1-203ENST00000378679 HCLS1P14317 486 aaPredicted RBP16.71■□□□□ 0.27
SHROOM1-203ENST00000378679 BEND3Q5T5X7 828 aa16.71■□□□□ 0.27
SHROOM1-203ENST00000378679 TTLL7Q6ZT98 887 aa16.71■□□□□ 0.27
SHROOM1-203ENST00000378679 CPSF1Q10570 1443 aaKnown RBP16.71■□□□□ 0.27
SHROOM1-203ENST00000378679 NEURL1BA8MQ27 555 aa16.71■□□□□ 0.26
SHROOM1-203ENST00000378679 CCT2P78371 535 aaKnown RBP16.71■□□□□ 0.26
SHROOM1-203ENST00000378679 CTDP1Q9Y5B0 961 aaPredicted RBP16.71■□□□□ 0.26
SHROOM1-203ENST00000378679 QRICH2Q9H0J4 1663 aa16.71■□□□□ 0.26
SHROOM1-203ENST00000378679 SPATA31A3Q5VYP0 1347 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 EYA2O00167 538 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 CDKL5O76039 1030 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 ZNF594Q96JF6 807 aaPredicted RBP16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 PAG1Q9NWQ8 432 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 ANAPC15P60006 121 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 CCDC82Q8N4S0 544 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 DBNDD2Q9BQY9 259 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 MCMDC2Q4G0Z9 681 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 TPTE2Q6XPS3 522 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 SSH3Q8TE77 659 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 SPATA32Q96LK8 384 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 USP26Q9BXU7 913 aa16.7■□□□□ 0.26
SHROOM1-203ENST00000378679 SH3TC1Q8TE82 1336 aa16.69■□□□□ 0.26
SHROOM1-203ENST00000378679 USP5P45974 858 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms