RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 BCL11BQ9C0K0 894 aaPredicted RBP9.84□□□□□ -0.83
VPS36-201ENST00000378060 TCEAL9Q9UHQ7 104 aa9.84□□□□□ -0.83
VPS36-201ENST00000378060 PCDHB15Q9Y5E8 787 aa9.84□□□□□ -0.83
VPS36-201ENST00000378060 U3KPZ7 1027 aaPredicted RBP9.84□□□□□ -0.83
VPS36-201ENST00000378060 PHRF1Q9P1Y6 1649 aaKnown RBP9.83□□□□□ -0.84
VPS36-201ENST00000378060 BTBD11A6QL63 1104 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 H0YHG0 523 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 HMGB1P09429 215 aaKnown RBP9.83□□□□□ -0.84
VPS36-201ENST00000378060 KIF18AQ8NI77 898 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 WASF1Q92558 559 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 RGPD5Q99666 1765 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 MAP3K19Q56UN5 1328 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 SFPQP23246 707 aaKnown RBP eCLIP9.83□□□□□ -0.84
VPS36-201ENST00000378060 CCDC57Q2TAC2 916 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 HSP90AB2PQ58FF8 381 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 CNNM1Q9NRU3 951 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 GNL3LQ9NVN8 582 aaKnown RBP9.83□□□□□ -0.84
VPS36-201ENST00000378060 NOL7Q9UMY1 257 aaKnown RBP9.83□□□□□ -0.84
VPS36-201ENST00000378060 GCP02774 474 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 TTC22Q5TAA0 569 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 TTLL5Q6EMB2 1281 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 MCM10Q7L590 875 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 NPC1L1Q9UHC9 1359 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 CRYBG1Q9Y4K1 1723 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 BRPF1P55201 1214 aaPredicted RBP9.83□□□□□ -0.84
VPS36-201ENST00000378060 PRPF40BQ6NWY9 871 aaKnown RBP9.83□□□□□ -0.84
VPS36-201ENST00000378060 FERMT3Q86UX7 667 aa9.83□□□□□ -0.84
VPS36-201ENST00000378060 RRP12Q5JTH9 1297 aaKnown RBP9.82□□□□□ -0.84
VPS36-201ENST00000378060 LARP1Q6PKG0 1096 aaKnown RBP9.82□□□□□ -0.84
VPS36-201ENST00000378060 AHDC1Q5TGY3 1603 aaPredicted RBP9.82□□□□□ -0.84
VPS36-201ENST00000378060 ABCA3Q99758 1704 aa9.82□□□□□ -0.84
VPS36-201ENST00000378060 CCDC69A6NI79 296 aa9.82□□□□□ -0.84
VPS36-201ENST00000378060 DYNC1I1O14576 645 aa9.82□□□□□ -0.84
VPS36-201ENST00000378060 NFAT5O94916 1531 aa9.82□□□□□ -0.84
VPS36-201ENST00000378060 ADAMTS2O95450 1211 aa9.82□□□□□ -0.84
VPS36-201ENST00000378060 CABP4P57796 275 aa9.82□□□□□ -0.84
VPS36-201ENST00000378060 PRIMPOLQ96LW4 560 aa9.82□□□□□ -0.84
VPS36-201ENST00000378060 AXIN2Q9Y2T1 843 aa9.82□□□□□ -0.84
VPS36-201ENST00000378060 XRCC6P12956 609 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS36-201ENST00000378060 AXDND1Q5T1B0 1012 aaPredicted RBP9.81□□□□□ -0.84
VPS36-201ENST00000378060 KCNH5Q8NCM2 988 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 ZSCAN12O43309 604 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 RAD21O60216 631 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 ANAPC15P60006 121 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 UBE2HP62256 183 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 IMMTQ16891 758 aaKnown RBP9.81□□□□□ -0.84
VPS36-201ENST00000378060 USP25Q9UHP3 1055 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 SBNO1A3KN83 1393 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 CDK5RAP3Q96JB5 506 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 CCDC43Q96MW1 224 aaKnown RBP9.81□□□□□ -0.84
VPS36-201ENST00000378060 GBP3Q9H0R5 595 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 SHPRHQ149N8 1683 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 USP31Q70CQ4 1352 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 STX6O43752 255 aa9.81□□□□□ -0.84
VPS36-201ENST00000378060 KIAA0232Q92628 1395 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 CFAP100Q494V2 611 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 CT47A1Q5JQC4 288 aaPredicted RBP9.8□□□□□ -0.84
VPS36-201ENST00000378060 IQCEQ6IPM2 695 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 LRSAM1Q6UWE0 723 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 TMCO3Q6UWJ1 677 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 CCAR1Q8IX12 1150 aaKnown RBP9.8□□□□□ -0.84
VPS36-201ENST00000378060 USHBP1Q8N6Y0 703 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 RGPD2P0DJD1 1756 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 GSDMDP57764 484 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 FKBP4Q02790 459 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS36-201ENST00000378060 FLIIQ13045 1269 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 HS1BP3Q53T59 392 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 DNAAF4Q8WXU2 420 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 DDX11Q96FC9 970 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 ECHDC1Q9NTX5 307 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 CEP131Q9UPN4 1083 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 PNPLA6Q8IY17 1366 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 AMOTQ4VCS5 1084 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 USP19O94966 1318 aa9.8□□□□□ -0.84
VPS36-201ENST00000378060 MYL6BP14649 208 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 LRRC59Q96AG4 307 aaKnown RBP9.79□□□□□ -0.84
VPS36-201ENST00000378060 EVI5LQ96CN4 794 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 CGNQ9P2M7 1197 aaKnown RBP9.79□□□□□ -0.84
VPS36-201ENST00000378060 CTDP1Q9Y5B0 961 aaPredicted RBP9.79□□□□□ -0.84
VPS36-201ENST00000378060 LRRFIP2Q9Y608 721 aaKnown RBP9.79□□□□□ -0.84
VPS36-201ENST00000378060 CAMK4Q16566 473 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 SMC5Q8IY18 1101 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 MIS18AQ9NYP9 233 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 SLIT3O75094 1523 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 USP54Q70EL1 1684 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 RDXP35241 583 aaKnown RBP9.79□□□□□ -0.84
VPS36-201ENST00000378060 ZSCAN23Q3MJ62 389 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 DBF4Q9UBU7 674 aaPredicted RBP9.79□□□□□ -0.84
VPS36-201ENST00000378060 CLIP2Q9UDT6 1046 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 AKAP2Q9Y2D5 859 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 F6X3S4 739 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 EPB41L2O43491 1005 aaKnown RBP9.79□□□□□ -0.84
VPS36-201ENST00000378060 KDM4AO75164 1064 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 ARHGAP29Q52LW3 1261 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 ANKRD44Q8N8A2 993 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 MBIPQ9NS73 344 aa9.79□□□□□ -0.84
VPS36-201ENST00000378060 COL3A1P02461 1466 aaPredicted RBP9.78□□□□□ -0.84
VPS36-201ENST00000378060 ERLIN2O94905 339 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 ADCY5O95622 1261 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 TNNT1P13805 278 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms