RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 SUSD4Q5VX71 490 aa18.22■□□□□ 0.51
CXCL12-202ENST00000374426 ZNF34Q8IZ26 560 aa18.22■□□□□ 0.51
CXCL12-202ENST00000374426 ADAMTSL1Q8N6G6 1762 aa18.22■□□□□ 0.51
CXCL12-202ENST00000374426 COL4A5P29400 1685 aa18.22■□□□□ 0.51
CXCL12-202ENST00000374426 CC2D2BQ6DHV5 1058 aa18.21■□□□□ 0.51
CXCL12-202ENST00000374426 SLC51AQ86UW1 340 aa18.21■□□□□ 0.51
CXCL12-202ENST00000374426 GPC2Q8N158 579 aa18.21■□□□□ 0.51
CXCL12-202ENST00000374426 RPGRQ92834 1020 aaKnown RBP18.21■□□□□ 0.51
CXCL12-202ENST00000374426 MAPK8IP3Q9UPT6 1336 aa18.21■□□□□ 0.51
CXCL12-202ENST00000374426 TMEM88BA6NKF7 163 aa18.2■□□□□ 0.5
CXCL12-202ENST00000374426 NTSR2O95665 410 aa18.2■□□□□ 0.5
CXCL12-202ENST00000374426 GIGYF2Q6Y7W6 1299 aaKnown RBP18.2■□□□□ 0.5
CXCL12-202ENST00000374426 C3orf67Q6ZVT6 689 aa18.2■□□□□ 0.5
CXCL12-202ENST00000374426 LRP10Q7Z4F1 713 aa18.2■□□□□ 0.5
CXCL12-202ENST00000374426 PNMA8AQ86V59 439 aaPredicted RBP18.2■□□□□ 0.5
CXCL12-202ENST00000374426 JDP2Q8WYK2 163 aa18.2■□□□□ 0.5
CXCL12-202ENST00000374426 ERBB4Q15303 1308 aa18.2■□□□□ 0.5
CXCL12-202ENST00000374426 CRAMP1Q96RY5 1269 aa18.19■□□□□ 0.5
CXCL12-202ENST00000374426 PNNQ9H307 717 aaKnown RBP18.19■□□□□ 0.5
CXCL12-202ENST00000374426 TSPYL4Q9UJ04 414 aa18.19■□□□□ 0.5
CXCL12-202ENST00000374426 CLEC11AQ9Y240 323 aa18.19■□□□□ 0.5
CXCL12-202ENST00000374426 PDIA6Q15084 440 aa18.18■□□□□ 0.5
CXCL12-202ENST00000374426 MAP1SQ66K74 1059 aaPredicted RBP18.18■□□□□ 0.5
CXCL12-202ENST00000374426 PPEF1O14829 653 aaPredicted RBP18.17■□□□□ 0.5
CXCL12-202ENST00000374426 FOXN1O15353 648 aa18.17■□□□□ 0.5
CXCL12-202ENST00000374426 VEGFBP49765 207 aa18.17■□□□□ 0.5
CXCL12-202ENST00000374426 GRIPAP1Q4V328 841 aa18.17■□□□□ 0.5
CXCL12-202ENST00000374426 CNTROBQ8N137 903 aa18.17■□□□□ 0.5
CXCL12-202ENST00000374426 RBM17Q96I25 401 aaKnown RBP18.17■□□□□ 0.5
CXCL12-202ENST00000374426 TCERG1O14776 1098 aaKnown RBP18.16■□□□□ 0.5
CXCL12-202ENST00000374426 EIF6P56537 245 aaKnown RBP18.16■□□□□ 0.5
CXCL12-202ENST00000374426 PROSER3Q2NL68 480 aa18.16■□□□□ 0.5
CXCL12-202ENST00000374426 PARP10Q53GL7 1025 aa18.16■□□□□ 0.5
CXCL12-202ENST00000374426 PPP1R42Q7Z4L9 355 aa18.16■□□□□ 0.5
CXCL12-202ENST00000374426 LARGE2Q8N3Y3 721 aa18.16■□□□□ 0.5
CXCL12-202ENST00000374426 GJA3Q9Y6H8 435 aa18.16■□□□□ 0.5
CXCL12-202ENST00000374426 LTBP1Q14766 1721 aa18.15■□□□□ 0.5
CXCL12-202ENST00000374426 ANXA1P04083 346 aa18.15■□□□□ 0.5
CXCL12-202ENST00000374426 EIF2S2P20042 333 aaKnown RBP18.15■□□□□ 0.5
CXCL12-202ENST00000374426 RIPK4P57078 832 aa18.15■□□□□ 0.5
CXCL12-202ENST00000374426 SCNN1DP51172 638 aa18.14■□□□□ 0.49
CXCL12-202ENST00000374426 SLC10A5Q5PT55 438 aa18.14■□□□□ 0.49
CXCL12-202ENST00000374426 NLRP3Q96P20 1036 aa18.14■□□□□ 0.49
CXCL12-202ENST00000374426 RASSF10A6NK89 507 aa18.13■□□□□ 0.49
CXCL12-202ENST00000374426 LMOD1P29536 600 aaPredicted RBP18.13■□□□□ 0.49
CXCL12-202ENST00000374426 EPS15P42566 896 aa18.13■□□□□ 0.49
CXCL12-202ENST00000374426 UTP14AQ9BVJ6 771 aaKnown RBP18.13■□□□□ 0.49
CXCL12-202ENST00000374426 BABAM1Q9NWV8 329 aa18.13■□□□□ 0.49
CXCL12-202ENST00000374426 TMPOP42166 694 aaKnown RBP18.12■□□□□ 0.49
CXCL12-202ENST00000374426 ATP6V0A2Q9Y487 856 aa18.12■□□□□ 0.49
CXCL12-202ENST00000374426 PPIP5K2O43314 1243 aa18.11■□□□□ 0.49
CXCL12-202ENST00000374426 AOC3Q16853 763 aa18.11■□□□□ 0.49
CXCL12-202ENST00000374426 DEFB115Q30KQ5 88 aa18.11■□□□□ 0.49
CXCL12-202ENST00000374426 NIM1KQ8IY84 436 aa18.11■□□□□ 0.49
CXCL12-202ENST00000374426 PRDM10Q9NQV6 1147 aa18.11■□□□□ 0.49
CXCL12-202ENST00000374426 DDX21Q9NR30 783 aaKnown RBP eCLIP18.11■□□□□ 0.49
CXCL12-202ENST00000374426 WBP1LQ9NX94 342 aa18.11■□□□□ 0.49
CXCL12-202ENST00000374426 ABCC4O15439 1325 aa18.11■□□□□ 0.49
CXCL12-202ENST00000374426 CTCFP49711 727 aaPredicted RBP18.1■□□□□ 0.49
CXCL12-202ENST00000374426 COPS6Q7L5N1 327 aa18.1■□□□□ 0.49
CXCL12-202ENST00000374426 NECTIN2Q92692 538 aa18.1■□□□□ 0.49
CXCL12-202ENST00000374426 AIDAQ96BJ3 306 aa18.1■□□□□ 0.49
CXCL12-202ENST00000374426 FMR1Q06787 632 aaKnown RBP eCLIP18.09■□□□□ 0.49
CXCL12-202ENST00000374426 LMOD3Q0VAK6 560 aa18.09■□□□□ 0.49
CXCL12-202ENST00000374426 AIMP1Q12904 312 aaKnown RBP18.09■□□□□ 0.49
CXCL12-202ENST00000374426 RALBP1Q15311 655 aa18.09■□□□□ 0.49
CXCL12-202ENST00000374426 NLRP10Q86W26 655 aa18.09■□□□□ 0.49
CXCL12-202ENST00000374426 XAGE3Q8WTP9 111 aa18.09■□□□□ 0.49
CXCL12-202ENST00000374426 RTFDC1Q9BY42 306 aaPredicted RBP18.09■□□□□ 0.49
CXCL12-202ENST00000374426 VPS33BQ9H267 617 aa18.09■□□□□ 0.49
CXCL12-202ENST00000374426 ABT1Q9ULW3 272 aaKnown RBP18.09■□□□□ 0.49
CXCL12-202ENST00000374426 HCLS1P14317 486 aaPredicted RBP18.08■□□□□ 0.48
CXCL12-202ENST00000374426 KRT24Q2M2I5 525 aa18.08■□□□□ 0.48
CXCL12-202ENST00000374426 HSP90AB3PQ58FF7 597 aa18.08■□□□□ 0.48
CXCL12-202ENST00000374426 USP50Q70EL3 339 aaPredicted RBP18.08■□□□□ 0.48
CXCL12-202ENST00000374426 TMX4Q9H1E5 349 aaPredicted RBP18.08■□□□□ 0.48
CXCL12-202ENST00000374426 WDR33Q9C0J8 1336 aaKnown RBP18.07■□□□□ 0.48
CXCL12-202ENST00000374426 CHL1O00533 1208 aa18.07■□□□□ 0.48
CXCL12-202ENST00000374426 BBOX1O75936 387 aa18.07■□□□□ 0.48
CXCL12-202ENST00000374426 CXCL9Q07325 125 aa18.07■□□□□ 0.48
CXCL12-202ENST00000374426 TCIRG1Q13488 830 aa18.07■□□□□ 0.48
CXCL12-202ENST00000374426 GPRC5DQ9NZD1 345 aa18.07■□□□□ 0.48
CXCL12-202ENST00000374426 ZNRF3Q9ULT6 936 aa18.07■□□□□ 0.48
CXCL12-202ENST00000374426 ANKRD36CQ5JPF3 1778 aa18.07■□□□□ 0.48
CXCL12-202ENST00000374426 TRAF5O00463 557 aa18.06■□□□□ 0.48
CXCL12-202ENST00000374426 LBX1P52954 281 aa18.06■□□□□ 0.48
CXCL12-202ENST00000374426 SP8Q8IXZ3 490 aa18.06■□□□□ 0.48
CXCL12-202ENST00000374426 CCDC146Q8IYE0 955 aa18.06■□□□□ 0.48
CXCL12-202ENST00000374426 SUPT20HQ8NEM7 779 aa18.06■□□□□ 0.48
CXCL12-202ENST00000374426 TRMT112Q9UI30 125 aaKnown RBP18.06■□□□□ 0.48
CXCL12-202ENST00000374426 LAMB2P55268 1798 aa18.06■□□□□ 0.48
CXCL12-202ENST00000374426 SH3TC1Q8TE82 1336 aa18.05■□□□□ 0.48
CXCL12-202ENST00000374426 NEUROD2Q15784 382 aa18.05■□□□□ 0.48
CXCL12-202ENST00000374426 CST9Q5W186 159 aa18.05■□□□□ 0.48
CXCL12-202ENST00000374426 DPP8Q6V1X1 898 aaPredicted RBP18.05■□□□□ 0.48
CXCL12-202ENST00000374426 ADARB2Q9NS39 739 aaKnown RBP18.05■□□□□ 0.48
CXCL12-202ENST00000374426 GMPSP49915 693 aaPredicted RBP18.04■□□□□ 0.48
CXCL12-202ENST00000374426 MAP2K1Q02750 393 aaPredicted RBP18.04■□□□□ 0.48
CXCL12-202ENST00000374426 KIAA2012Q0VF49 1180 aa18.04■□□□□ 0.48
CXCL12-202ENST00000374426 MPNDQ8N594 471 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms