RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 KIF6Q6ZMV9 814 aa17.42■□□□□ 0.38
COL5A1-201ENST00000371817 DDX27Q96GQ7 796 aaKnown RBP17.42■□□□□ 0.38
COL5A1-201ENST00000371817 TTC12Q9H892 705 aaPredicted RBP17.42■□□□□ 0.38
COL5A1-201ENST00000371817 GDPD2Q9HCC8 539 aa17.42■□□□□ 0.38
COL5A1-201ENST00000371817 SF3B2Q13435 895 aaKnown RBP17.42■□□□□ 0.38
COL5A1-201ENST00000371817 GBP5Q96PP8 586 aa17.42■□□□□ 0.38
COL5A1-201ENST00000371817 SYT1P21579 422 aa17.42■□□□□ 0.38
COL5A1-201ENST00000371817 CCDC63Q8NA47 563 aa17.42■□□□□ 0.38
COL5A1-201ENST00000371817 LRRC45Q96CN5 670 aa17.42■□□□□ 0.38
COL5A1-201ENST00000371817 KRT86O43790 486 aa17.42■□□□□ 0.38
COL5A1-201ENST00000371817 RNF10Q8N5U6 811 aaKnown RBP17.42■□□□□ 0.38
COL5A1-201ENST00000371817 SPATS2LQ9NUQ6 558 aaKnown RBP17.42■□□□□ 0.38
COL5A1-201ENST00000371817 MIER3Q7Z3K6 550 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 FAM200AQ8TCP9 573 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 GIMAP6Q6P9H5 292 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 UBA5Q9GZZ9 404 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 AKR1B10O60218 316 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 ATP5DP30049 168 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 AMPD3Q01432 767 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 PABPN1LA6NDY0 278 aaKnown RBP17.41■□□□□ 0.38
COL5A1-201ENST00000371817 GMNNO75496 209 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 JAKMIP2Q96AA8 810 aa17.41■□□□□ 0.38
COL5A1-201ENST00000371817 N4BP3O15049 544 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 RLBP1P12271 317 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 MX1P20591 662 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 SLC4A2P04920 1241 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 MTHFSP49914 203 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 CCDC186Q7Z3E2 898 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 FERMT2Q96AC1 680 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 TMEM266Q2M3C6 531 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 HNRNPMP52272 730 aaKnown RBP eCLIP17.4■□□□□ 0.38
COL5A1-201ENST00000371817 SSX2IPQ9Y2D8 614 aa17.4■□□□□ 0.38
COL5A1-201ENST00000371817 KRT13P13646 458 aa17.39■□□□□ 0.38
COL5A1-201ENST00000371817 PSMD1Q99460 953 aa17.39■□□□□ 0.38
COL5A1-201ENST00000371817 CCDC144CPQ8IYA2 1237 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 VIMP08670 466 aaKnown RBP17.39■□□□□ 0.37
COL5A1-201ENST00000371817 KIF5AQ12840 1032 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 TBC1D5Q92609 795 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 DIXDC1Q155Q3 683 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 GOLGA6CA6NDK9 693 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 RHOXF2BP0C7M4 288 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 GOLGA6DP0CG33 693 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 RHOXF2Q9BQY4 288 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 GOLGA6AQ9NYA3 693 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 PFDN1O60925 122 aa17.39■□□□□ 0.37
COL5A1-201ENST00000371817 KRT83P78385 493 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 TNIP1Q15025 636 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 CFAP157Q5JU67 520 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 ERO1AQ96HE7 468 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 KCNK9Q9NPC2 374 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 GAS2L2Q8NHY3 880 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 SRGAP3O43295 1099 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 TMEM57Q8N5G2 664 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 ARHGEF2Q92974 986 aaKnown RBP17.38■□□□□ 0.37
COL5A1-201ENST00000371817 AKAP2Q9Y2D5 859 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 CETN3O15182 167 aa17.38■□□□□ 0.37
COL5A1-201ENST00000371817 DBN1Q16643 649 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 ARHGAP24Q8N264 748 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 PEX19P40855 299 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 CCDC40Q4G0X9 1142 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 TRIM4Q9C037 500 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 ZSCAN16Q9H4T2 348 aaPredicted RBP17.37■□□□□ 0.37
COL5A1-201ENST00000371817 IFT81Q8WYA0 676 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 CCDC102BQ68D86 513 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 RPGRIP1LQ68CZ1 1315 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 U2AF2P26368 475 aaKnown RBP eCLIP17.37■□□□□ 0.37
COL5A1-201ENST00000371817 ISM2Q6H9L7 571 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 ERCC6LQ2NKX8 1250 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 SPTY2D1Q68D10 685 aaPredicted RBP17.37■□□□□ 0.37
COL5A1-201ENST00000371817 PIBF1Q8WXW3 757 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 TSGA10Q9BZW7 698 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 CUX1P39880 1505 aa17.37■□□□□ 0.37
COL5A1-201ENST00000371817 LUC7L3O95232 432 aaKnown RBP17.37■□□□□ 0.37
COL5A1-201ENST00000371817 ARL1P40616 181 aaPredicted RBP17.37■□□□□ 0.37
COL5A1-201ENST00000371817 TSR2Q969E8 191 aaKnown RBP17.37■□□□□ 0.37
COL5A1-201ENST00000371817 MTRF1LQ9UGC7 380 aaKnown RBP17.37■□□□□ 0.37
COL5A1-201ENST00000371817 DHX29Q7Z478 1369 aaKnown RBP17.37■□□□□ 0.37
COL5A1-201ENST00000371817 GJB2P29033 226 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 PPP2R3AQ06190 1150 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 UBLCP1Q8WVY7 318 aaPredicted RBP17.36■□□□□ 0.37
COL5A1-201ENST00000371817 MCUR1Q96AQ8 359 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 NKIRAS1Q9NYS0 192 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 GKAP1Q5VSY0 366 aaPredicted RBP17.36■□□□□ 0.37
COL5A1-201ENST00000371817 GSDMBQ8TAX9 411 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 CAPZA3Q96KX2 299 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 ODF2LQ9ULJ1 636 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 FYB2Q5VWT5 728 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 HPDP32754 393 aaPredicted RBP17.36■□□□□ 0.37
COL5A1-201ENST00000371817 COG7P83436 770 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 TCERG1LQ5VWI1 586 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 GUCY1B3Q02153 619 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 RAPGEF4Q8WZA2 1011 aa17.36■□□□□ 0.37
COL5A1-201ENST00000371817 NKTRP30414 1462 aaKnown RBP17.36■□□□□ 0.37
COL5A1-201ENST00000371817 MGEA5O60502 916 aa17.35■□□□□ 0.37
COL5A1-201ENST00000371817 CCDC62Q6P9F0 684 aa17.35■□□□□ 0.37
COL5A1-201ENST00000371817 RMND1Q9NWS8 449 aa17.35■□□□□ 0.37
COL5A1-201ENST00000371817 TPX2Q9ULW0 747 aaKnown RBP17.35■□□□□ 0.37
COL5A1-201ENST00000371817 SMIM23A6NLE4 172 aa17.35■□□□□ 0.37
COL5A1-201ENST00000371817 GIGYF1O75420 1035 aaPredicted RBP17.35■□□□□ 0.37
COL5A1-201ENST00000371817 PPP4R3AQ6IN85 833 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms