RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 GTF3C6Q969F1 213 aa13.85□□□□□ -0.19
SMARCA1-201ENST00000371121 TRERF1Q96PN7 1200 aa13.85□□□□□ -0.19
SMARCA1-201ENST00000371121 TFIP11Q9UBB9 837 aaKnown RBP13.85□□□□□ -0.19
SMARCA1-201ENST00000371121 CLCN6P51797 869 aa13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 E4F1Q66K89 784 aaPredicted RBP13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 LEO1Q8WVC0 666 aaPredicted RBP13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 CEP170BQ9Y4F5 1589 aaPredicted RBP13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 VPS37CA5D8V6 355 aaPredicted RBP13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 GNAI3P08754 354 aa13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 RAD51AP2Q09MP3 1159 aa13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 LAMA4Q16363 1823 aa13.84□□□□□ -0.19
SMARCA1-201ENST00000371121 ZNF165P49910 485 aa13.83□□□□□ -0.19
SMARCA1-201ENST00000371121 ERO1AQ96HE7 468 aa13.83□□□□□ -0.19
SMARCA1-201ENST00000371121 TNMDQ9H2S6 317 aa13.83□□□□□ -0.19
SMARCA1-201ENST00000371121 TRMT1Q9NXH9 659 aaKnown RBP13.83□□□□□ -0.19
SMARCA1-201ENST00000371121 ADD1P35611 737 aaKnown RBP13.83□□□□□ -0.2
SMARCA1-201ENST00000371121 ST5P78524 1137 aa13.83□□□□□ -0.2
SMARCA1-201ENST00000371121 LCMT1Q9UIC8 334 aa13.83□□□□□ -0.2
SMARCA1-201ENST00000371121 NEDD4P46934 1319 aa13.83□□□□□ -0.2
SMARCA1-201ENST00000371121 FLIIQ13045 1269 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 TOB2Q14106 344 aaPredicted RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 LARP1Q6PKG0 1096 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 PXDNLA1KZ92 1463 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 USP42Q9H9J4 1324 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 SASH3O75995 380 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 PNMA6AP0CW24 399 aaPredicted RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 SKILP12757 684 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 GOLPH3LQ9H4A5 285 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 ATG3Q9NT62 314 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 ATP6V1DQ9Y5K8 247 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 SNW1Q13573 536 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 PRPF40BQ6NWY9 871 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 MRFAP1L1Q96HT8 127 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 JAKMIP1Q96N16 626 aaKnown RBP13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 PDRG1Q9NUG6 133 aa13.82□□□□□ -0.2
SMARCA1-201ENST00000371121 NPHP1O15259 732 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 MTHFSDQ2M296 383 aaKnown RBP13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 TCEANC2Q96MN5 208 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 TOPAZ1Q8N9V7 1692 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 HSP90AB2PQ58FF8 381 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 MAP3K19Q56UN5 1328 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 RHPN1Q8TCX5 695 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 FTOQ9C0B1 505 aaKnown RBP eCLIP13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 ABCC6O95255 1503 aa13.81□□□□□ -0.2
SMARCA1-201ENST00000371121 OVOS2A0A0J9YW53 1432 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 OVOS2Q6IE36 1432 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 COL15A1P39059 1388 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 CCDC69A6NI79 296 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 PTPN14Q15678 1187 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 CERS3Q8IU89 383 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 DRC7Q8IY82 874 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 TM6SF1Q9BZW5 370 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 CCDC66A2RUB6 948 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 KRT85P78386 507 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 ARMCX5Q6P1M9 558 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 PPP1R42Q7Z4L9 355 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 NEK11Q8NG66 645 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 ERCC4Q92889 916 aaPredicted RBP13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 TRIM34Q9BYJ4 488 aa13.8□□□□□ -0.2
SMARCA1-201ENST00000371121 NPHP3Q7Z494 1330 aa13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 PRR36Q9H6K5 1346 aa13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 SLU7O95391 586 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 LARP1BQ659C4 914 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 DNAJC2Q99543 621 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 ZCCHC17Q9NP64 241 aaKnown RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 NBPF7P0C2Y1 421 aaPredicted RBP13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 NECTIN2Q92692 538 aa13.79□□□□□ -0.2
SMARCA1-201ENST00000371121 PDIA4P13667 645 aaKnown RBP13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 RESTQ13127 1097 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 REXO1L1PQ8IX06 675 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 ZBTB9Q96C00 473 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 PPP1R13BQ96KQ4 1090 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 NOL10Q9BSC4 688 aaKnown RBP13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 EPC1Q9H2F5 836 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 MAP3K5Q99683 1374 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 RICTORQ6R327 1708 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 SMARCE1Q969G3 411 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 DDX11Q96FC9 970 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 NWD1Q149M9 1564 aa13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 PHAXQ9H814 394 aaKnown RBP13.78□□□□□ -0.2
SMARCA1-201ENST00000371121 JAK2O60674 1132 aa13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 SPATA32Q96LK8 384 aa13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 FAM227BQ96M60 508 aa13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 SH2B1Q9NRF2 756 aaPredicted RBP13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 MARF1Q9Y4F3 1742 aaKnown RBP13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 JCADQ9P266 1359 aa13.77□□□□□ -0.2
SMARCA1-201ENST00000371121 SEC31AO94979 1220 aaKnown RBP13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 CHMP4AQ9BY43 222 aa13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 DDX19AQ9NUU7 478 aaKnown RBP13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 CALCOCO1Q9P1Z2 691 aa13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 TRIM65Q6PJ69 517 aa13.77□□□□□ -0.21
SMARCA1-201ENST00000371121 CREB3L3Q68CJ9 461 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 ENGASEQ8NFI3 743 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 HSD3B7Q9H2F3 369 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 TRIM66O15016 1216 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 FAM193AP78312 1265 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 TSGA10IPQ3SY00 556 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 FBXO31Q5XUX0 539 aaPredicted RBP13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 MAP4K1Q92918 833 aa13.76□□□□□ -0.21
SMARCA1-201ENST00000371121 SNRKQ9NRH2 765 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms