RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 LRRC69Q6ZNQ3 347 aa9.18□□□□□ -0.94
RNU4-39P-201ENST00000362455 NEUROD4Q9HD90 331 aa9.18□□□□□ -0.94
RNU4-39P-201ENST00000362455 LDHBP07195 334 aaKnown RBP9.17□□□□□ -0.94
RNU4-39P-201ENST00000362455 C8orf34Q49A92 452 aa9.17□□□□□ -0.94
RNU4-39P-201ENST00000362455 PIK3R5Q8WYR1 880 aa9.17□□□□□ -0.94
RNU4-39P-201ENST00000362455 GGNBP2Q9H3C7 697 aa9.17□□□□□ -0.94
RNU4-39P-201ENST00000362455 ATP13A2Q9NQ11 1180 aa9.17□□□□□ -0.94
RNU4-39P-201ENST00000362455 DNMT3LQ9UJW3 386 aa9.17□□□□□ -0.94
RNU4-39P-201ENST00000362455 CUX2O14529 1486 aa9.16□□□□□ -0.94
RNU4-39P-201ENST00000362455 A0A1W2PNR3 127 aa9.16□□□□□ -0.94
RNU4-39P-201ENST00000362455 INPP5BP32019 993 aa9.16□□□□□ -0.94
RNU4-39P-201ENST00000362455 BTLAQ7Z6A9 289 aa9.16□□□□□ -0.94
RNU4-39P-201ENST00000362455 GPAMQ9HCL2 828 aa9.16□□□□□ -0.94
RNU4-39P-201ENST00000362455 A6NHS1 94 aa9.15□□□□□ -0.94
RNU4-39P-201ENST00000362455 RPLP1P05386 114 aaKnown RBP9.15□□□□□ -0.94
RNU4-39P-201ENST00000362455 ARSDP51689 593 aa9.15□□□□□ -0.94
RNU4-39P-201ENST00000362455 TTC16Q8NEE8 873 aa9.15□□□□□ -0.94
RNU4-39P-201ENST00000362455 RUBCNLQ9H714 662 aa9.15□□□□□ -0.94
RNU4-39P-201ENST00000362455 USP20Q9Y2K6 914 aa9.15□□□□□ -0.94
RNU4-39P-201ENST00000362455 PRPF40AO75400 957 aaKnown RBP9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 VAMP1P23763 118 aa9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 ENOX2Q16206 610 aaKnown RBP9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 SETDB2Q96T68 719 aa9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 CRISPLD1Q9H336 500 aa9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 IGSF5Q9NSI5 407 aa9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 WWC3Q9ULE0 1092 aa9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 RTCBQ9Y3I0 505 aaKnown RBP9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 DYRK1BQ9Y463 629 aa9.14□□□□□ -0.95
RNU4-39P-201ENST00000362455 PNMA6FA0A0J9YX94 578 aa9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 F11P03951 625 aa9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 ATP2B2Q01814 1243 aa9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 BCL11AQ9H165 835 aa9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 SENP2Q9HC62 589 aa9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 DACH1Q9UI36 760 aa9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 GJA3Q9Y6H8 435 aa9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 ATAD2BQ9ULI0 1458 aa9.13□□□□□ -0.95
RNU4-39P-201ENST00000362455 FGD1P98174 961 aa9.12□□□□□ -0.95
RNU4-39P-201ENST00000362455 TYRO3Q06418 890 aa9.12□□□□□ -0.95
RNU4-39P-201ENST00000362455 ORC1Q13415 861 aa9.12□□□□□ -0.95
RNU4-39P-201ENST00000362455 TRIP4Q15650 581 aaPredicted RBP9.12□□□□□ -0.95
RNU4-39P-201ENST00000362455 CMTR1Q8N1G2 835 aaKnown RBP9.12□□□□□ -0.95
RNU4-39P-201ENST00000362455 CSRNP1Q96S65 589 aa9.12□□□□□ -0.95
RNU4-39P-201ENST00000362455 GAS2L1Q99501 681 aaPredicted RBP9.12□□□□□ -0.95
RNU4-39P-201ENST00000362455 DUSP9Q99956 384 aaKnown RBP9.12□□□□□ -0.95
RNU4-39P-201ENST00000362455 ERCC6Q03468 1493 aa9.11□□□□□ -0.95
RNU4-39P-201ENST00000362455 MAN1A2O60476 641 aa9.11□□□□□ -0.95
RNU4-39P-201ENST00000362455 PGBD3Q8N328 593 aa9.11□□□□□ -0.95
RNU4-39P-201ENST00000362455 KIFC2Q96AC6 838 aa9.11□□□□□ -0.95
RNU4-39P-201ENST00000362455 CEP63Q96MT8 703 aa9.11□□□□□ -0.95
RNU4-39P-201ENST00000362455 RNF19AQ9NV58 838 aa9.11□□□□□ -0.95
RNU4-39P-201ENST00000362455 PARP2Q9UGN5 583 aa9.11□□□□□ -0.95
RNU4-39P-201ENST00000362455 KCNMB2Q9Y691 235 aa9.11□□□□□ -0.95
RNU4-39P-201ENST00000362455 NESP48681 1621 aa9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 SENP3-EIF4A1A0A087X0R7 540 aa9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 EIF1AYO14602 144 aaKnown RBP9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 RECKO95980 971 aa9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 GRNP28799 593 aaKnown RBP9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 XPCQ01831 940 aaPredicted RBP9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 NLRP8Q86W28 1048 aa9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 FAM161BQ96MY7 647 aa9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 FNDC3AQ9Y2H6 1198 aaKnown RBP9.1□□□□□ -0.95
RNU4-39P-201ENST00000362455 SOBPA7XYQ1 873 aa9.09□□□□□ -0.95
RNU4-39P-201ENST00000362455 UBAP1LF5GYI3 381 aa9.09□□□□□ -0.95
RNU4-39P-201ENST00000362455 NEFLP07196 543 aa9.09□□□□□ -0.95
RNU4-39P-201ENST00000362455 EPB42P16452 691 aa9.09□□□□□ -0.95
RNU4-39P-201ENST00000362455 MRPL58Q14197 206 aaKnown RBP9.09□□□□□ -0.95
RNU4-39P-201ENST00000362455 ALG1LQ6GMV1 187 aa9.09□□□□□ -0.95
RNU4-39P-201ENST00000362455 ZNF438Q7Z4V0 828 aa9.09□□□□□ -0.95
RNU4-39P-201ENST00000362455 CFHR5Q9BXR6 569 aa9.09□□□□□ -0.95
RNU4-39P-201ENST00000362455 TNFRSF21O75509 655 aa9.08□□□□□ -0.96
RNU4-39P-201ENST00000362455 TCF3P15923 654 aa9.08□□□□□ -0.96
RNU4-39P-201ENST00000362455 SAMD5Q5TGI4 173 aa9.08□□□□□ -0.96
RNU4-39P-201ENST00000362455 PDE12Q6L8Q7 609 aaKnown RBP9.08□□□□□ -0.96
RNU4-39P-201ENST00000362455 XKR5Q6UX68 686 aa9.08□□□□□ -0.96
RNU4-39P-201ENST00000362455 BRD7Q9NPI1 651 aa9.08□□□□□ -0.96
RNU4-39P-201ENST00000362455 FOXD3Q9UJU5 478 aaPredicted RBP9.08□□□□□ -0.96
RNU4-39P-201ENST00000362455 CPNE3O75131 537 aaKnown RBP9.07□□□□□ -0.96
RNU4-39P-201ENST00000362455 TSNAXIP1Q2TAA8 658 aa9.07□□□□□ -0.96
RNU4-39P-201ENST00000362455 EFHC2Q5JST6 749 aa9.07□□□□□ -0.96
RNU4-39P-201ENST00000362455 TMC4Q7Z404 712 aa9.07□□□□□ -0.96
RNU4-39P-201ENST00000362455 ZCCHC2Q9C0B9 1178 aaKnown RBP9.07□□□□□ -0.96
RNU4-39P-201ENST00000362455 DNAJC25Q9H1X3 360 aa9.07□□□□□ -0.96
RNU4-39P-201ENST00000362455 GMPR2Q9P2T1 348 aaKnown RBP9.07□□□□□ -0.96
RNU4-39P-201ENST00000362455 XYLBO75191 536 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 DAB2P98082 770 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 PTSQ03393 145 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 PSMD2Q13200 908 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 RIPOR1Q6ZS17 1223 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 SNX29Q8TEQ0 813 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 FBF1Q8TES7 1133 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 TRIM47Q96LD4 638 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 BACH2Q9BYV9 841 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 ELP3Q9H9T3 547 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 MRS2Q9HD23 443 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 TMEM63CQ9P1W3 806 aa9.06□□□□□ -0.96
RNU4-39P-201ENST00000362455 LCE2BO14633 110 aa9.05□□□□□ -0.96
RNU4-39P-201ENST00000362455 THBS1P07996 1170 aa9.05□□□□□ -0.96
RNU4-39P-201ENST00000362455 LBRQ14739 615 aaKnown RBP9.05□□□□□ -0.96
RNU4-39P-201ENST00000362455 USPL1Q5W0Q7 1092 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms