RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 LRRCC1Q9C099 1032 aa28.73■■■□□ 2.19
SDF4-202ENST00000360001 PCCAP05165 728 aaPredicted RBP28.73■■■□□ 2.19
SDF4-202ENST00000360001 FOXO4P98177 505 aa28.73■■■□□ 2.19
SDF4-202ENST00000360001 C16orf71Q8IYS4 520 aaPredicted RBP28.73■■■□□ 2.19
SDF4-202ENST00000360001 ZNF34Q8IZ26 560 aa28.73■■■□□ 2.19
SDF4-202ENST00000360001 C4BP0C0L5 1744 aa28.73■■■□□ 2.19
SDF4-202ENST00000360001 RAB11FIP3O75154 756 aa28.72■■■□□ 2.19
SDF4-202ENST00000360001 LRRC4BQ9NT99 713 aa28.72■■■□□ 2.19
SDF4-202ENST00000360001 RPS6KA4O75676 772 aa28.71■■■□□ 2.19
SDF4-202ENST00000360001 FAM161AQ3B820 660 aa28.71■■■□□ 2.19
SDF4-202ENST00000360001 ZBTB38Q8NAP3 1195 aaPredicted RBP28.71■■■□□ 2.19
SDF4-202ENST00000360001 UBN2Q6ZU65 1347 aa28.71■■■□□ 2.19
SDF4-202ENST00000360001 C8orf34Q49A92 452 aa28.71■■■□□ 2.19
SDF4-202ENST00000360001 PA2G4Q9UQ80 394 aaKnown RBP28.7■■■□□ 2.19
SDF4-202ENST00000360001 HSP90AB4PQ58FF6 505 aa28.7■■■□□ 2.18
SDF4-202ENST00000360001 PLEKHM2Q8IWE5 1019 aa28.7■■■□□ 2.18
SDF4-202ENST00000360001 GNPATO15228 680 aa28.69■■■□□ 2.18
SDF4-202ENST00000360001 OTUD7AQ8TE49 926 aaPredicted RBP28.69■■■□□ 2.18
SDF4-202ENST00000360001 FAM89AQ96GI7 184 aa28.69■■■□□ 2.18
SDF4-202ENST00000360001 LMBR1LQ6UX01 489 aa28.68■■■□□ 2.18
SDF4-202ENST00000360001 SMIM5Q71RC9 77 aa28.68■■■□□ 2.18
SDF4-202ENST00000360001 BCL11AQ9H165 835 aa28.68■■■□□ 2.18
SDF4-202ENST00000360001 RFX5P48382 616 aaPredicted RBP28.67■■■□□ 2.18
SDF4-202ENST00000360001 SLC27A3Q5K4L6 730 aa28.67■■■□□ 2.18
SDF4-202ENST00000360001 RHPN1Q8TCX5 695 aa28.67■■■□□ 2.18
SDF4-202ENST00000360001 RBM19Q9Y4C8 960 aaKnown RBP28.67■■■□□ 2.18
SDF4-202ENST00000360001 SCN7AQ01118 1682 aa28.67■■■□□ 2.18
SDF4-202ENST00000360001 KIF1BPQ96EK5 621 aa28.66■■■□□ 2.18
SDF4-202ENST00000360001 CDHR2Q9BYE9 1310 aa28.66■■■□□ 2.18
SDF4-202ENST00000360001 AMIGO3Q86WK7 504 aa28.66■■■□□ 2.18
SDF4-202ENST00000360001 PLA2G12BQ9BX93 195 aa28.66■■■□□ 2.18
SDF4-202ENST00000360001 RTCBQ9Y3I0 505 aaKnown RBP28.66■■■□□ 2.18
SDF4-202ENST00000360001 CLEC4GQ6UXB4 293 aa28.65■■■□□ 2.18
SDF4-202ENST00000360001 ZNF652Q9Y2D9 606 aa28.65■■■□□ 2.18
SDF4-202ENST00000360001 SYNE4Q8N205 404 aa28.64■■■□□ 2.18
SDF4-202ENST00000360001 KLHDC4Q8TBB5 520 aa28.64■■■□□ 2.18
SDF4-202ENST00000360001 TRMT112Q9UI30 125 aaKnown RBP28.64■■■□□ 2.18
SDF4-202ENST00000360001 SALL3Q9BXA9 1300 aa28.64■■■□□ 2.17
SDF4-202ENST00000360001 RGL2O15211 777 aa28.64■■■□□ 2.17
SDF4-202ENST00000360001 IL1RAPL2Q9NP60 686 aa28.64■■■□□ 2.17
SDF4-202ENST00000360001 COPRSQ9NQ92 184 aa28.64■■■□□ 2.17
SDF4-202ENST00000360001 PTPN12Q05209 780 aaKnown RBP28.63■■■□□ 2.17
SDF4-202ENST00000360001 OS9Q13438 667 aaPredicted RBP28.63■■■□□ 2.17
SDF4-202ENST00000360001 SUSD4Q5VX71 490 aa28.62■■■□□ 2.17
SDF4-202ENST00000360001 NARFQ9UHQ1 456 aa28.62■■■□□ 2.17
SDF4-202ENST00000360001 PARP10Q53GL7 1025 aa28.62■■■□□ 2.17
SDF4-202ENST00000360001 BMP2KLQ5H9B9 411 aa28.62■■■□□ 2.17
SDF4-202ENST00000360001 ERC1Q8IUD2 1116 aa28.62■■■□□ 2.17
SDF4-202ENST00000360001 PROM2Q8N271 834 aa28.62■■■□□ 2.17
SDF4-202ENST00000360001 AK7Q96M32 723 aa28.62■■■□□ 2.17
SDF4-202ENST00000360001 NIP7Q9Y221 180 aaKnown RBP eCLIP28.62■■■□□ 2.172e-9■□□□□ 9.6
SDF4-202ENST00000360001 G3BP1Q13283 466 aaKnown RBP eCLIP28.61■■■□□ 2.17
SDF4-202ENST00000360001 ARHGEF1Q92888 912 aaKnown RBP28.61■■■□□ 2.17
SDF4-202ENST00000360001 BCL2L12Q9HB09 334 aa28.61■■■□□ 2.17
SDF4-202ENST00000360001 CHMP3Q9Y3E7 222 aa28.61■■■□□ 2.17
SDF4-202ENST00000360001 C4AP0C0L4 1744 aa28.6■■■□□ 2.17
SDF4-202ENST00000360001 PLSCR1O15162 318 aa28.6■■■□□ 2.17
SDF4-202ENST00000360001 TXNRD1Q16881 649 aa28.6■■■□□ 2.17
SDF4-202ENST00000360001 SIL1Q9H173 461 aa28.6■■■□□ 2.17
SDF4-202ENST00000360001 OSBPL3Q9H4L5 887 aa28.6■■■□□ 2.17
SDF4-202ENST00000360001 UBR3Q6ZT12 1888 aa28.6■■■□□ 2.17
SDF4-202ENST00000360001 SRP68Q9UHB9 627 aaKnown RBP28.59■■■□□ 2.17
SDF4-202ENST00000360001 IRS4O14654 1257 aaPredicted RBP28.59■■■□□ 2.17
SDF4-202ENST00000360001 SASH1O94885 1247 aa28.59■■■□□ 2.17
SDF4-202ENST00000360001 CSF1RP07333 972 aa28.59■■■□□ 2.17
SDF4-202ENST00000360001 PDE1AP54750 535 aa28.59■■■□□ 2.17
SDF4-202ENST00000360001 USPL1Q5W0Q7 1092 aa28.59■■■□□ 2.17
SDF4-202ENST00000360001 UTP14AQ9BVJ6 771 aaKnown RBP28.59■■■□□ 2.17
SDF4-202ENST00000360001 TNS1Q9HBL0 1735 aaKnown RBP28.58■■■□□ 2.17
SDF4-202ENST00000360001 MYH3P11055 1940 aa28.58■■■□□ 2.17
SDF4-202ENST00000360001 APBA3O96018 575 aa28.57■■■□□ 2.16
SDF4-202ENST00000360001 GSPT1P15170 499 aaKnown RBP28.57■■■□□ 2.16
SDF4-202ENST00000360001 TTC22Q5TAA0 569 aa28.57■■■□□ 2.16
SDF4-202ENST00000360001 SH3TC1Q8TE82 1336 aa28.57■■■□□ 2.16
SDF4-202ENST00000360001 NTSR2O95665 410 aa28.57■■■□□ 2.16
SDF4-202ENST00000360001 ZPR1O75312 459 aa28.56■■■□□ 2.16
SDF4-202ENST00000360001 MX1P20591 662 aa28.56■■■□□ 2.16
SDF4-202ENST00000360001 TRAPPC3LQ5T215 181 aa28.56■■■□□ 2.16
SDF4-202ENST00000360001 STAP2Q9UGK3 403 aa28.55■■■□□ 2.16
SDF4-202ENST00000360001 FAM177BA6PVY3 158 aa28.55■■■□□ 2.16
SDF4-202ENST00000360001 PHF14O94880 888 aa28.55■■■□□ 2.16
SDF4-202ENST00000360001 CTSWP56202 376 aa28.55■■■□□ 2.16
SDF4-202ENST00000360001 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.55■■■□□ 2.16
SDF4-202ENST00000360001 PDE8AO60658 829 aa28.54■■■□□ 2.16
SDF4-202ENST00000360001 ADRA2BP18089 450 aa28.54■■■□□ 2.16
SDF4-202ENST00000360001 TBC1D9BQ66K14 1250 aa28.54■■■□□ 2.16
SDF4-202ENST00000360001 NUTM1Q86Y26 1132 aa28.54■■■□□ 2.16
SDF4-202ENST00000360001 TTLL11Q8NHH1 800 aa28.54■■■□□ 2.16
SDF4-202ENST00000360001 USP42Q9H9J4 1324 aaKnown RBP28.54■■■□□ 2.16
SDF4-202ENST00000360001 CLASRPQ8N2M8 674 aaKnown RBP28.53■■■□□ 2.16
SDF4-202ENST00000360001 DDX60Q8IY21 1712 aaKnown RBP28.53■■■□□ 2.16
SDF4-202ENST00000360001 RFC4P35249 363 aa28.53■■■□□ 2.16
SDF4-202ENST00000360001 CCDC57Q2TAC2 916 aa28.52■■■□□ 2.16
SDF4-202ENST00000360001 TSHZ3Q63HK5 1081 aa28.52■■■□□ 2.16
SDF4-202ENST00000360001 LAMB2P55268 1798 aa28.52■■■□□ 2.16
SDF4-202ENST00000360001 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.51■■■□□ 2.16
SDF4-202ENST00000360001 CCDC85AQ96PX6 553 aaPredicted RBP28.51■■■□□ 2.16
SDF4-202ENST00000360001 COL24A1Q17RW2 1714 aa28.51■■■□□ 2.15
SDF4-202ENST00000360001 HMGB2P26583 209 aaKnown RBP28.51■■■□□ 2.15
SDF4-202ENST00000360001 ZNF594Q96JF6 807 aaPredicted RBP28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms