RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 HDAC5Q9UQL6 1122 aa16.76■□□□□ 0.27
TRIM4-201ENST00000349062 GORABQ5T7V8 394 aa16.76■□□□□ 0.27
TRIM4-201ENST00000349062 CAVIN1Q6NZI2 390 aaKnown RBP16.76■□□□□ 0.27
TRIM4-201ENST00000349062 FAM208AQ9UK61 1670 aaKnown RBP16.76■□□□□ 0.27
TRIM4-201ENST00000349062 FOSBP53539 338 aa16.75■□□□□ 0.27
TRIM4-201ENST00000349062 ERC1Q8IUD2 1116 aa16.75■□□□□ 0.27
TRIM4-201ENST00000349062 SEC62Q99442 399 aaKnown RBP16.75■□□□□ 0.27
TRIM4-201ENST00000349062 SGSM2O43147 1006 aa16.75■□□□□ 0.27
TRIM4-201ENST00000349062 KCNQ4P56696 695 aa16.75■□□□□ 0.27
TRIM4-201ENST00000349062 ADCK5Q3MIX3 580 aa16.75■□□□□ 0.27
TRIM4-201ENST00000349062 HSP90AB3PQ58FF7 597 aa16.75■□□□□ 0.27
TRIM4-201ENST00000349062 RBM27Q9P2N5 1060 aaKnown RBP16.75■□□□□ 0.27
TRIM4-201ENST00000349062 MRE11P49959 708 aa16.74■□□□□ 0.27
TRIM4-201ENST00000349062 NECAB1Q8N987 351 aa16.74■□□□□ 0.27
TRIM4-201ENST00000349062 COL9A3Q14050 684 aaPredicted RBP16.74■□□□□ 0.27
TRIM4-201ENST00000349062 PUS3Q9BZE2 481 aaKnown RBP16.74■□□□□ 0.27
TRIM4-201ENST00000349062 ZMYND15Q9H091 742 aa16.74■□□□□ 0.27
TRIM4-201ENST00000349062 SLIT3O75094 1523 aa16.74■□□□□ 0.27
TRIM4-201ENST00000349062 A0A0D9SFI3 127 aa16.74■□□□□ 0.27
TRIM4-201ENST00000349062 LRRC24Q50LG9 513 aa16.74■□□□□ 0.27
TRIM4-201ENST00000349062 SNX14Q9Y5W7 946 aa16.74■□□□□ 0.27
TRIM4-201ENST00000349062 ESPNB1AK53 854 aa16.73■□□□□ 0.27
TRIM4-201ENST00000349062 FKBP4Q02790 459 aaKnown RBP eCLIP16.73■□□□□ 0.27
TRIM4-201ENST00000349062 PIGBQ92521 554 aa16.73■□□□□ 0.27
TRIM4-201ENST00000349062 CWC25Q9NXE8 425 aaPredicted RBP16.73■□□□□ 0.27
TRIM4-201ENST00000349062 STRCP1A6NGW2 1772 aa16.73■□□□□ 0.27
TRIM4-201ENST00000349062 CCDC83Q8IWF9 413 aa16.73■□□□□ 0.27
TRIM4-201ENST00000349062 RUFY2Q8WXA3 655 aa16.73■□□□□ 0.27
TRIM4-201ENST00000349062 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.73■□□□□ 0.273e-9■■■■■ 35
TRIM4-201ENST00000349062 NCAPD2Q15021 1401 aa16.72■□□□□ 0.27
TRIM4-201ENST00000349062 GOLIM4O00461 696 aa16.72■□□□□ 0.27
TRIM4-201ENST00000349062 FGD1P98174 961 aa16.72■□□□□ 0.27
TRIM4-201ENST00000349062 PLBD2Q8NHP8 589 aa16.72■□□□□ 0.27
TRIM4-201ENST00000349062 LRRC2Q9BYS8 371 aa16.72■□□□□ 0.27
TRIM4-201ENST00000349062 DBNLQ9UJU6 430 aaKnown RBP16.72■□□□□ 0.27
TRIM4-201ENST00000349062 PRIM1P49642 420 aaKnown RBP16.72■□□□□ 0.27
TRIM4-201ENST00000349062 AK2P54819 239 aa16.72■□□□□ 0.27
TRIM4-201ENST00000349062 PTPN12Q05209 780 aaKnown RBP16.72■□□□□ 0.27
TRIM4-201ENST00000349062 TAF6LQ9Y6J9 622 aa16.72■□□□□ 0.27
TRIM4-201ENST00000349062 CIZ1Q9ULV3 898 aaPredicted RBP16.71■□□□□ 0.27
TRIM4-201ENST00000349062 CLCN1P35523 988 aa16.71■□□□□ 0.27
TRIM4-201ENST00000349062 NUCB2P80303 420 aa16.71■□□□□ 0.27
TRIM4-201ENST00000349062 SMIM5Q71RC9 77 aa16.71■□□□□ 0.27
TRIM4-201ENST00000349062 RBM8AQ9Y5S9 174 aaKnown RBP16.71■□□□□ 0.27
TRIM4-201ENST00000349062 CAMTA1Q9Y6Y1 1673 aa16.71■□□□□ 0.27
TRIM4-201ENST00000349062 LRRC37A3O60309 1634 aa16.71■□□□□ 0.26
TRIM4-201ENST00000349062 CARD10Q9BWT7 1032 aa16.71■□□□□ 0.26
TRIM4-201ENST00000349062 ZNF589Q86UQ0 364 aaPredicted RBP16.7■□□□□ 0.26
TRIM4-201ENST00000349062 EVI5LQ96CN4 794 aa16.7■□□□□ 0.26
TRIM4-201ENST00000349062 LSG1Q9H089 658 aaKnown RBP16.7■□□□□ 0.26
TRIM4-201ENST00000349062 VPS37CA5D8V6 355 aaPredicted RBP16.7■□□□□ 0.26
TRIM4-201ENST00000349062 TNNI3KQ59H18 835 aa16.7■□□□□ 0.26
TRIM4-201ENST00000349062 FPGT-TNNI3KV9GXZ4 949 aa16.7■□□□□ 0.26
TRIM4-201ENST00000349062 HEG1Q9ULI3 1381 aa16.7■□□□□ 0.26
TRIM4-201ENST00000349062 EXOC5O00471 708 aa16.69■□□□□ 0.26
TRIM4-201ENST00000349062 SOS2Q07890 1332 aaPredicted RBP16.69■□□□□ 0.26
TRIM4-201ENST00000349062 ZKSCAN1P17029 563 aaPredicted RBP16.69■□□□□ 0.26
TRIM4-201ENST00000349062 HSPA4P34932 840 aa16.69■□□□□ 0.26
TRIM4-201ENST00000349062 DDIT3P35638 169 aa16.69■□□□□ 0.26
TRIM4-201ENST00000349062 LARGE1O95461 756 aa16.69■□□□□ 0.26
TRIM4-201ENST00000349062 KIF6Q6ZMV9 814 aa16.69■□□□□ 0.26
TRIM4-201ENST00000349062 HELBQ8NG08 1087 aaPredicted RBP16.69■□□□□ 0.26
TRIM4-201ENST00000349062 ANP32BQ92688 251 aaKnown RBP16.69■□□□□ 0.26
TRIM4-201ENST00000349062 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.68■□□□□ 0.26
TRIM4-201ENST00000349062 MTX1Q13505 466 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 CCDC57Q2TAC2 916 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 FAM182BQ5T319 152 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 FERMT3Q86UX7 667 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 GAS2L3Q86XJ1 694 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 TTC41PQ6P2S7 1318 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 RAD50Q92878 1312 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 HLFQ16534 295 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 PDRG1Q9NUG6 133 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 ZDHHC9Q9Y397 364 aa16.68■□□□□ 0.26
TRIM4-201ENST00000349062 FSD2A1L4K1 749 aa16.67■□□□□ 0.26
TRIM4-201ENST00000349062 HSP90B1P14625 803 aaKnown RBP16.67■□□□□ 0.26
TRIM4-201ENST00000349062 TRPM3Q9HCF6 1732 aaPredicted RBP16.67■□□□□ 0.26
TRIM4-201ENST00000349062 KDM4AO75164 1064 aa16.67■□□□□ 0.26
TRIM4-201ENST00000349062 RBM10P98175 930 aaKnown RBP16.67■□□□□ 0.26
TRIM4-201ENST00000349062 ERBB4Q15303 1308 aa16.67■□□□□ 0.26
TRIM4-201ENST00000349062 PXDNLA1KZ92 1463 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 LRP10Q7Z4F1 713 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 RNF214Q8ND24 703 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 SMC3Q9UQE7 1217 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 ERVV-2B6SEH9 535 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 WASHC4Q2M389 1173 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 PI16Q6UXB8 463 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 CHST3Q7LGC8 479 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 ZBTB1Q9Y2K1 713 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 CYP46A1Q9Y6A2 500 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 SNAP23O00161 211 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 STARD3NLO95772 234 aa16.66■□□□□ 0.26
TRIM4-201ENST00000349062 NSFL1CQ9UNZ2 370 aaKnown RBP16.66■□□□□ 0.26
TRIM4-201ENST00000349062 FIBPO43427 364 aa16.65■□□□□ 0.26
TRIM4-201ENST00000349062 STK11IPQ8N1F8 1099 aa16.65■□□□□ 0.26
TRIM4-201ENST00000349062 ATG3Q9NT62 314 aa16.65■□□□□ 0.26
TRIM4-201ENST00000349062 CREB3L3Q68CJ9 461 aa16.65■□□□□ 0.26
TRIM4-201ENST00000349062 BICDL1Q6ZP65 573 aa16.65■□□□□ 0.26
TRIM4-201ENST00000349062 RUFY3Q7L099 469 aa16.65■□□□□ 0.26
TRIM4-201ENST00000349062 CCDC171Q6TFL3 1326 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms