RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 PPP1R42Q7Z4L9 355 aa18.32■□□□□ 0.52
CXCL12-201ENST00000343575 NPM2Q86SE8 214 aaKnown RBP18.32■□□□□ 0.52
CXCL12-201ENST00000343575 NLRP10Q86W26 655 aa18.32■□□□□ 0.52
CXCL12-201ENST00000343575 BICC1Q9H694 974 aaKnown RBP18.32■□□□□ 0.52
CXCL12-201ENST00000343575 BCL2L12Q9HB09 334 aa18.32■□□□□ 0.52
CXCL12-201ENST00000343575 BCORQ6W2J9 1755 aa18.32■□□□□ 0.52
CXCL12-201ENST00000343575 GPTP24298 496 aa18.31■□□□□ 0.52
CXCL12-201ENST00000343575 POLA2Q14181 598 aa18.31■□□□□ 0.52
CXCL12-201ENST00000343575 HSP90AB3PQ58FF7 597 aa18.31■□□□□ 0.52
CXCL12-201ENST00000343575 RTCBQ9Y3I0 505 aaKnown RBP18.31■□□□□ 0.52
CXCL12-201ENST00000343575 UBR3Q6ZT12 1888 aa18.3■□□□□ 0.52
CXCL12-201ENST00000343575 SYNE4Q8N205 404 aa18.3■□□□□ 0.52
CXCL12-201ENST00000343575 ARHGEF1Q92888 912 aaKnown RBP18.3■□□□□ 0.52
CXCL12-201ENST00000343575 GCC1Q96CN9 775 aa18.3■□□□□ 0.52
CXCL12-201ENST00000343575 SRP68Q9UHB9 627 aaKnown RBP18.29■□□□□ 0.52
CXCL12-201ENST00000343575 FOXO4P98177 505 aa18.29■□□□□ 0.52
CXCL12-201ENST00000343575 NUCB1Q02818 461 aa18.29■□□□□ 0.52
CXCL12-201ENST00000343575 RABL6Q3YEC7 729 aaPredicted RBP18.29■□□□□ 0.52
CXCL12-201ENST00000343575 NARFQ9UHQ1 456 aa18.29■□□□□ 0.52
CXCL12-201ENST00000343575 C4AP0C0L4 1744 aa18.28■□□□□ 0.52
CXCL12-201ENST00000343575 SRGAP3O43295 1099 aa18.28■□□□□ 0.52
CXCL12-201ENST00000343575 HMMRO75330 724 aa18.28■□□□□ 0.52
CXCL12-201ENST00000343575 PCCAP05165 728 aaPredicted RBP18.28■□□□□ 0.52
CXCL12-201ENST00000343575 CLEC4GQ6UXB4 293 aa18.28■□□□□ 0.52
CXCL12-201ENST00000343575 FAM89AQ96GI7 184 aa18.28■□□□□ 0.52
CXCL12-201ENST00000343575 SCN7AQ01118 1682 aa18.28■□□□□ 0.52
CXCL12-201ENST00000343575 PDE4AP27815 886 aa18.27■□□□□ 0.52
CXCL12-201ENST00000343575 ZBTB38Q8NAP3 1195 aaPredicted RBP18.27■□□□□ 0.52
CXCL12-201ENST00000343575 AK7Q96M32 723 aa18.27■□□□□ 0.52
CXCL12-201ENST00000343575 HDAC5Q9UQL6 1122 aa18.27■□□□□ 0.52
CXCL12-201ENST00000343575 RGL2O15211 777 aa18.26■□□□□ 0.51
CXCL12-201ENST00000343575 SUSD4Q5VX71 490 aa18.26■□□□□ 0.51
CXCL12-201ENST00000343575 USPL1Q5W0Q7 1092 aa18.26■□□□□ 0.51
CXCL12-201ENST00000343575 RGPD3A6NKT7 1758 aaPredicted RBP18.26■□□□□ 0.51
CXCL12-201ENST00000343575 RGPD4Q7Z3J3 1758 aa18.26■□□□□ 0.51
CXCL12-201ENST00000343575 PHF14O94880 888 aa18.26■□□□□ 0.51
CXCL12-201ENST00000343575 ZNF827Q17R98 1081 aa18.26■□□□□ 0.51
CXCL12-201ENST00000343575 CAMKK2Q96RR4 588 aa18.26■□□□□ 0.51
CXCL12-201ENST00000343575 EXOC6BQ9Y2D4 811 aa18.26■□□□□ 0.51
CXCL12-201ENST00000343575 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.25■□□□□ 0.51
CXCL12-201ENST00000343575 TRAPPC3LQ5T215 181 aa18.25■□□□□ 0.51
CXCL12-201ENST00000343575 ANKRD45Q5TZF3 282 aa18.25■□□□□ 0.51
CXCL12-201ENST00000343575 CHD1LQ86WJ1 897 aa18.25■□□□□ 0.51
CXCL12-201ENST00000343575 AKT1S1Q96B36 256 aa18.25■□□□□ 0.51
CXCL12-201ENST00000343575 USP42Q9H9J4 1324 aaKnown RBP18.25■□□□□ 0.51
CXCL12-201ENST00000343575 NIP7Q9Y221 180 aaKnown RBP eCLIP18.24■□□□□ 0.51
CXCL12-201ENST00000343575 RFX5P48382 616 aaPredicted RBP18.24■□□□□ 0.51
CXCL12-201ENST00000343575 RGS3P49796 1198 aa18.24■□□□□ 0.51
CXCL12-201ENST00000343575 TBC1D9BQ66K14 1250 aa18.24■□□□□ 0.51
CXCL12-201ENST00000343575 PLA2G12BQ9BX93 195 aa18.24■□□□□ 0.51
CXCL12-201ENST00000343575 LNPKQ9C0E8 428 aa18.24■□□□□ 0.51
CXCL12-201ENST00000343575 CDHR2Q9BYE9 1310 aa18.24■□□□□ 0.51
CXCL12-201ENST00000343575 ADRA2BP18089 450 aa18.23■□□□□ 0.51
CXCL12-201ENST00000343575 EN1Q05925 392 aaPredicted RBP18.23■□□□□ 0.51
CXCL12-201ENST00000343575 EZH2Q15910 746 aaKnown RBP18.23■□□□□ 0.51
CXCL12-201ENST00000343575 LMBR1LQ6UX01 489 aa18.23■□□□□ 0.51
CXCL12-201ENST00000343575 TRMT112Q9UI30 125 aaKnown RBP18.23■□□□□ 0.51
CXCL12-201ENST00000343575 PA2G4Q9UQ80 394 aaKnown RBP18.23■□□□□ 0.51
CXCL12-201ENST00000343575 ZNF652Q9Y2D9 606 aa18.23■□□□□ 0.51
CXCL12-201ENST00000343575 NTSR2O95665 410 aa18.22■□□□□ 0.51
CXCL12-201ENST00000343575 SSFA2P28290 1259 aa18.22■□□□□ 0.51
CXCL12-201ENST00000343575 ZPR1O75312 459 aa18.22■□□□□ 0.51
CXCL12-201ENST00000343575 RFC4P35249 363 aa18.22■□□□□ 0.51
CXCL12-201ENST00000343575 PARP10Q53GL7 1025 aa18.22■□□□□ 0.51
CXCL12-201ENST00000343575 APBB1O00213 710 aa18.21■□□□□ 0.51
CXCL12-201ENST00000343575 SMARCA5O60264 1052 aaPredicted RBP18.21■□□□□ 0.51
CXCL12-201ENST00000343575 SURF6O75683 361 aaKnown RBP18.21■□□□□ 0.51
CXCL12-201ENST00000343575 KLHDC4Q8TBB5 520 aa18.21■□□□□ 0.51
CXCL12-201ENST00000343575 FAM177BA6PVY3 158 aa18.2■□□□□ 0.5
CXCL12-201ENST00000343575 CSF1RP07333 972 aa18.2■□□□□ 0.5
CXCL12-201ENST00000343575 C16orf71Q8IYS4 520 aaPredicted RBP18.2■□□□□ 0.5
CXCL12-201ENST00000343575 UTP14AQ9BVJ6 771 aaKnown RBP18.2■□□□□ 0.5
CXCL12-201ENST00000343575 TUBGCP6Q96RT7 1819 aa18.2■□□□□ 0.5
CXCL12-201ENST00000343575 IRS4O14654 1257 aaPredicted RBP18.2■□□□□ 0.5
CXCL12-201ENST00000343575 PTPN12Q05209 780 aaKnown RBP18.2■□□□□ 0.5
CXCL12-201ENST00000343575 BICDL1Q6ZP65 573 aa18.2■□□□□ 0.5
CXCL12-201ENST00000343575 DDRGK1Q96HY6 314 aa18.2■□□□□ 0.5
CXCL12-201ENST00000343575 GYS1P13807 737 aa18.19■□□□□ 0.5
CXCL12-201ENST00000343575 DEFB132Q7Z7B7 95 aa18.19■□□□□ 0.5
CXCL12-201ENST00000343575 COL24A1Q17RW2 1714 aa18.18■□□□□ 0.5
CXCL12-201ENST00000343575 SH3TC1Q8TE82 1336 aa18.18■□□□□ 0.5
CXCL12-201ENST00000343575 NUTM1Q86Y26 1132 aa18.18■□□□□ 0.5
CXCL12-201ENST00000343575 TTLL11Q8NHH1 800 aa18.18■□□□□ 0.5
CXCL12-201ENST00000343575 OTUD7AQ8TE49 926 aaPredicted RBP18.18■□□□□ 0.5
CXCL12-201ENST00000343575 ANO8Q9HCE9 1232 aaPredicted RBP18.18■□□□□ 0.5
CXCL12-201ENST00000343575 COPRSQ9NQ92 184 aa18.18■□□□□ 0.5
CXCL12-201ENST00000343575 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.18■□□□□ 0.5
CXCL12-201ENST00000343575 DDX60Q8IY21 1712 aaKnown RBP18.17■□□□□ 0.5
CXCL12-201ENST00000343575 HCLS1P14317 486 aaPredicted RBP18.17■□□□□ 0.5
CXCL12-201ENST00000343575 HMGB2P26583 209 aaKnown RBP18.17■□□□□ 0.5
CXCL12-201ENST00000343575 COL23A1Q86Y22 540 aaPredicted RBP18.17■□□□□ 0.5
CXCL12-201ENST00000343575 BACH2Q9BYV9 841 aa18.17■□□□□ 0.5
CXCL12-201ENST00000343575 TFCP2L1Q9NZI6 479 aa18.17■□□□□ 0.5
CXCL12-201ENST00000343575 RAB11FIP3O75154 756 aa18.16■□□□□ 0.5
CXCL12-201ENST00000343575 CTSWP56202 376 aa18.16■□□□□ 0.5
CXCL12-201ENST00000343575 NFIXQ14938 502 aa18.16■□□□□ 0.5
CXCL12-201ENST00000343575 RHPN1Q8TCX5 695 aa18.16■□□□□ 0.5
CXCL12-201ENST00000343575 LRRCC1Q9C099 1032 aa18.16■□□□□ 0.5
CXCL12-201ENST00000343575 MYH3P11055 1940 aa18.16■□□□□ 0.5
CXCL12-201ENST00000343575 PDE8AO60658 829 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms