RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 MASTLQ96GX5 879 aa24.59■■□□□ 1.53
SYNE4-202ENST00000340477 ABCC12Q96J65 1359 aa24.58■■□□□ 1.53
SYNE4-202ENST00000340477 VAMP4O75379 141 aa24.58■■□□□ 1.53
SYNE4-202ENST00000340477 SLC4A2P04920 1241 aa24.58■■□□□ 1.53
SYNE4-202ENST00000340477 NLRP10Q86W26 655 aa24.58■■□□□ 1.53
SYNE4-202ENST00000340477 TNRC6CQ9HCJ0 1690 aaKnown RBP24.58■■□□□ 1.53
SYNE4-202ENST00000340477 SRGNP10124 158 aa24.57■■□□□ 1.52
SYNE4-202ENST00000340477 NPR1P16066 1061 aa24.57■■□□□ 1.52
SYNE4-202ENST00000340477 ARHGAP27Q6ZUM4 889 aa24.57■■□□□ 1.52
SYNE4-202ENST00000340477 TRMT112Q9UI30 125 aaKnown RBP24.57■■□□□ 1.52
SYNE4-202ENST00000340477 SLFN5Q08AF3 891 aa24.55■■□□□ 1.52
SYNE4-202ENST00000340477 NEXNQ0ZGT2 675 aa24.55■■□□□ 1.52
SYNE4-202ENST00000340477 RPGRQ92834 1020 aaKnown RBP24.55■■□□□ 1.52
SYNE4-202ENST00000340477 SH3TC1Q8TE82 1336 aa24.55■■□□□ 1.52
SYNE4-202ENST00000340477 KLRG2A4D1S0 409 aaPredicted RBP24.54■■□□□ 1.52
SYNE4-202ENST00000340477 ATP5J2-PTCD1G3V325 749 aa24.54■■□□□ 1.52
SYNE4-202ENST00000340477 KSR2Q6VAB6 950 aa24.54■■□□□ 1.52
SYNE4-202ENST00000340477 MYD88Q99836 296 aa24.54■■□□□ 1.52
SYNE4-202ENST00000340477 ISCA1Q9BUE6 129 aa24.54■■□□□ 1.52
SYNE4-202ENST00000340477 MAP3K2Q9Y2U5 619 aa24.54■■□□□ 1.52
SYNE4-202ENST00000340477 FLIIQ13045 1269 aa24.53■■□□□ 1.52
SYNE4-202ENST00000340477 FKBP5Q13451 457 aaPredicted RBP24.53■■□□□ 1.52
SYNE4-202ENST00000340477 NLRP3Q96P20 1036 aa24.53■■□□□ 1.52
SYNE4-202ENST00000340477 ALDH1B1P30837 517 aa24.52■■□□□ 1.52
SYNE4-202ENST00000340477 HNRNPUQ00839 825 aaKnown RBP eCLIP24.52■■□□□ 1.52
SYNE4-202ENST00000340477 TRIM28Q13263 835 aaKnown RBP24.52■■□□□ 1.52
SYNE4-202ENST00000340477 SOGA3Q5TF21 947 aa24.52■■□□□ 1.52
SYNE4-202ENST00000340477 METTL22Q9BUU2 404 aaPredicted RBP24.52■■□□□ 1.52
SYNE4-202ENST00000340477 PI4KAP2A4QPH2 592 aa24.51■■□□□ 1.51
SYNE4-202ENST00000340477 HSP90B1P14625 803 aaKnown RBP24.51■■□□□ 1.51
SYNE4-202ENST00000340477 PRPF40BQ6NWY9 871 aaKnown RBP24.51■■□□□ 1.51
SYNE4-202ENST00000340477 PI4KAP1Q8N8J0 262 aa24.51■■□□□ 1.51
SYNE4-202ENST00000340477 SLX4Q8IY92 1834 aa24.5■■□□□ 1.51
SYNE4-202ENST00000340477 CRY2Q49AN0 593 aa24.5■■□□□ 1.51
SYNE4-202ENST00000340477 CCDC191Q8NCU4 936 aa24.5■■□□□ 1.51
SYNE4-202ENST00000340477 RBM17Q96I25 401 aaKnown RBP24.5■■□□□ 1.51
SYNE4-202ENST00000340477 LAMB2P55268 1798 aa24.49■■□□□ 1.51
SYNE4-202ENST00000340477 SLC10A5Q5PT55 438 aa24.49■■□□□ 1.51
SYNE4-202ENST00000340477 G2E3Q7L622 706 aa24.49■■□□□ 1.51
SYNE4-202ENST00000340477 ZNF428Q96B54 188 aa24.49■■□□□ 1.51
SYNE4-202ENST00000340477 CDCA7LQ96GN5 454 aa24.49■■□□□ 1.51
SYNE4-202ENST00000340477 CWC25Q9NXE8 425 aaPredicted RBP24.49■■□□□ 1.51
SYNE4-202ENST00000340477 ZNF219Q9P2Y4 722 aaPredicted RBP24.49■■□□□ 1.51
SYNE4-202ENST00000340477 ADCY9O60503 1353 aa24.49■■□□□ 1.51
SYNE4-202ENST00000340477 DDX60Q8IY21 1712 aaKnown RBP24.47■■□□□ 1.51
SYNE4-202ENST00000340477 C21orf2O43822 256 aa24.47■■□□□ 1.51
SYNE4-202ENST00000340477 HCLS1P14317 486 aaPredicted RBP24.46■■□□□ 1.51
SYNE4-202ENST00000340477 ZBTB38Q8NAP3 1195 aaPredicted RBP24.46■■□□□ 1.51
SYNE4-202ENST00000340477 FAM89AQ96GI7 184 aa24.46■■□□□ 1.51
SYNE4-202ENST00000340477 CT47B1P0C2W7 299 aaPredicted RBP24.45■■□□□ 1.5
SYNE4-202ENST00000340477 HOXA10P31260 410 aaPredicted RBP24.45■■□□□ 1.5
SYNE4-202ENST00000340477 DNAAF4Q8WXU2 420 aa24.45■■□□□ 1.5
SYNE4-202ENST00000340477 TMX4Q9H1E5 349 aaPredicted RBP24.45■■□□□ 1.5
SYNE4-202ENST00000340477 CCDC93Q567U6 631 aa24.44■■□□□ 1.5
SYNE4-202ENST00000340477 RTL5Q5HYW3 569 aaPredicted RBP24.44■■□□□ 1.5
SYNE4-202ENST00000340477 CRAMP1Q96RY5 1269 aa24.44■■□□□ 1.5
SYNE4-202ENST00000340477 FER1L6Q2WGJ9 1857 aa24.44■■□□□ 1.5
SYNE4-202ENST00000340477 IRS4O14654 1257 aaPredicted RBP24.43■■□□□ 1.5
SYNE4-202ENST00000340477 DDX46Q7L014 1031 aaKnown RBP24.43■■□□□ 1.5
SYNE4-202ENST00000340477 TRMT2AQ8IZ69 625 aaKnown RBP24.43■■□□□ 1.5
SYNE4-202ENST00000340477 SBF1O95248 1867 aa24.43■■□□□ 1.5
SYNE4-202ENST00000340477 PCCAP05165 728 aaPredicted RBP24.42■■□□□ 1.5
SYNE4-202ENST00000340477 SYNE4Q8N205 404 aa24.42■■□□□ 1.5
SYNE4-202ENST00000340477 RASSF7Q02833 373 aa24.41■■□□□ 1.5
SYNE4-202ENST00000340477 C9orf131Q5VYM1 1079 aa24.41■■□□□ 1.5
SYNE4-202ENST00000340477 C3orf67Q6ZVT6 689 aa24.41■■□□□ 1.5
SYNE4-202ENST00000340477 TAOK3Q9H2K8 898 aa24.41■■□□□ 1.5
SYNE4-202ENST00000340477 RNF181Q9P0P0 153 aa24.41■■□□□ 1.5
SYNE4-202ENST00000340477 NEURL1BA8MQ27 555 aa24.4■■□□□ 1.5
SYNE4-202ENST00000340477 PPEF1O14829 653 aaPredicted RBP24.4■■□□□ 1.5
SYNE4-202ENST00000340477 IGKV5-2P06315 115 aa24.4■■□□□ 1.5
SYNE4-202ENST00000340477 LMNB1P20700 586 aa24.4■■□□□ 1.5
SYNE4-202ENST00000340477 ALDH1L2Q3SY69 923 aa24.4■■□□□ 1.5
SYNE4-202ENST00000340477 CC2D2BQ6DHV5 1058 aa24.4■■□□□ 1.5
SYNE4-202ENST00000340477 LINS1Q8NG48 757 aa24.4■■□□□ 1.5
SYNE4-202ENST00000340477 CCDC88AQ3V6T2 1871 aa24.4■■□□□ 1.5
SYNE4-202ENST00000340477 CWF19L2Q2TBE0 894 aaKnown RBP24.39■■□□□ 1.49
SYNE4-202ENST00000340477 RTKN2Q8IZC4 609 aa24.39■■□□□ 1.49
SYNE4-202ENST00000340477 ZNF784Q8NCA9 323 aaPredicted RBP24.39■■□□□ 1.49
SYNE4-202ENST00000340477 SMC4Q9NTJ3 1288 aa24.39■■□□□ 1.49
SYNE4-202ENST00000340477 ABCC4O15439 1325 aa24.38■■□□□ 1.49
SYNE4-202ENST00000340477 PTPRCP08575 1304 aa24.38■■□□□ 1.49
SYNE4-202ENST00000340477 LTBP3Q9NS15 1303 aa24.38■■□□□ 1.49
SYNE4-202ENST00000340477 MYH3P11055 1940 aa24.38■■□□□ 1.49
SYNE4-202ENST00000340477 GRIPAP1Q4V328 841 aa24.38■■□□□ 1.49
SYNE4-202ENST00000340477 SSH1Q8WYL5 1049 aa24.38■■□□□ 1.49
SYNE4-202ENST00000340477 TIAM2Q8IVF5 1701 aa24.38■■□□□ 1.49
SYNE4-202ENST00000340477 ZBED9Q6R2W3 1325 aa24.37■■□□□ 1.49
SYNE4-202ENST00000340477 CDHR2Q9BYE9 1310 aa24.37■■□□□ 1.49
SYNE4-202ENST00000340477 NFKBIEO00221 500 aa24.37■■□□□ 1.49
SYNE4-202ENST00000340477 MRPL50Q8N5N7 158 aaKnown RBP24.37■■□□□ 1.49
SYNE4-202ENST00000340477 F6X3S4 739 aa24.36■■□□□ 1.49
SYNE4-202ENST00000340477 PDE8AO60658 829 aa24.36■■□□□ 1.49
SYNE4-202ENST00000340477 SF3B3Q15393 1217 aaKnown RBP24.36■■□□□ 1.49
SYNE4-202ENST00000340477 C7orf43Q8WVR3 580 aa24.36■■□□□ 1.49
SYNE4-202ENST00000340477 ZC3H4Q9UPT8 1303 aaKnown RBP24.35■■□□□ 1.49
SYNE4-202ENST00000340477 BBOX1O75936 387 aa24.35■■□□□ 1.49
SYNE4-202ENST00000340477 GRAPQ13588 217 aa24.35■■□□□ 1.49
SYNE4-202ENST00000340477 GCKRQ14397 625 aa24.35■■□□□ 1.49
SYNE4-202ENST00000340477 CCDC152Q4G0S7 254 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms