RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SIK1P57059 783 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 EYA3Q99504 573 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 PHAXQ9H814 394 aaKnown RBP8.14□□□□□ -1.11
SF3B1-201ENST00000335508 CHAF1AQ13111 956 aaPredicted RBP8.14□□□□□ -1.11
SF3B1-201ENST00000335508 TTC22Q5TAA0 569 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 NUTM1Q86Y26 1132 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 USP44Q9H0E7 712 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 K7ELQ4 463 aaPredicted RBP8.13□□□□□ -1.11
SF3B1-201ENST00000335508 TRIM28Q13263 835 aaKnown RBP8.13□□□□□ -1.11
SF3B1-201ENST00000335508 FAM98CQ17RN3 349 aaKnown RBP8.13□□□□□ -1.11
SF3B1-201ENST00000335508 COPRSQ9NQ92 184 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 TNS3Q68CZ2 1445 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 PLCG2P16885 1265 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 CWC27Q6UX04 472 aaKnown RBP8.13□□□□□ -1.11
SF3B1-201ENST00000335508 UNC5CLQ8IV45 518 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 WASF1Q92558 559 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 STK32BQ9NY57 414 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 ANKIB1Q9P2G1 1089 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 CWF19L2Q2TBE0 894 aaKnown RBP8.13□□□□□ -1.11
SF3B1-201ENST00000335508 DZIP1Q86YF9 867 aaKnown RBP8.13□□□□□ -1.11
SF3B1-201ENST00000335508 CLTCL1P53675 1640 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 GNPATO15228 680 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 KIAA2012Q0VF49 1180 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 CNBD1Q8NA66 436 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 ACSBG1Q96GR2 724 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 KIDINS220Q9ULH0 1771 aa8.13□□□□□ -1.11
SF3B1-201ENST00000335508 PDE8AO60658 829 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 IGSF3O75054 1194 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 A1BGP04217 495 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 TMTC2Q8N394 836 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 BECN2A8MW95 431 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 PCCAP05165 728 aaPredicted RBP8.12□□□□□ -1.11
SF3B1-201ENST00000335508 G2E3Q7L622 706 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 SPATA31A6Q5VVP1 1343 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 CYP27B1O15528 508 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 CLEC4GQ6UXB4 293 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 FBXW7Q969H0 707 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 ARHGAP23Q9P227 1491 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 USP19O94966 1318 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 KRT85P78386 507 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 GOLGA6L3A6NEY3 463 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 POLD1P28340 1107 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 CCDC178Q5BJE1 867 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 UPF3BQ9BZI7 483 aaKnown RBP8.12□□□□□ -1.11
SF3B1-201ENST00000335508 TMC4Q7Z404 712 aa8.12□□□□□ -1.11
SF3B1-201ENST00000335508 DDX17Q92841 729 aaKnown RBP8.12□□□□□ -1.11
SF3B1-201ENST00000335508 JAKMIP1Q96N16 626 aaKnown RBP8.12□□□□□ -1.11
SF3B1-201ENST00000335508 RBM27Q9P2N5 1060 aaKnown RBP8.12□□□□□ -1.11
SF3B1-201ENST00000335508 TPM3P06753 285 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 CTCFLQ8NI51 663 aaPredicted RBP8.11□□□□□ -1.11
SF3B1-201ENST00000335508 BICD2Q8TD16 824 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 ERVV-1B6SEH8 477 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 GSTO1P78417 241 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 LIMCH1Q9UPQ0 1083 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 ZNF396Q96N95 335 aaPredicted RBP8.11□□□□□ -1.11
SF3B1-201ENST00000335508 IGHDP01880 384 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 ADRA2BP18089 450 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 FRMPD1Q5SYB0 1578 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 ANKRD20A12PQ8NF67 263 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 SDF4Q9BRK5 362 aa8.11□□□□□ -1.11
SF3B1-201ENST00000335508 NSFL1CQ9UNZ2 370 aaKnown RBP8.11□□□□□ -1.11
SF3B1-201ENST00000335508 GNAT2P19087 354 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 RPS8P62241 208 aaKnown RBP8.1□□□□□ -1.11
SF3B1-201ENST00000335508 OGFOD1Q8N543 542 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 FAM89AQ96GI7 184 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 GPR108Q9NPR9 543 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 NBPF7P0C2Y1 421 aaPredicted RBP8.1□□□□□ -1.11
SF3B1-201ENST00000335508 MTX1Q13505 466 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 SCAND2PQ9GZW5 306 aaPredicted RBP8.1□□□□□ -1.11
SF3B1-201ENST00000335508 ATG3Q9NT62 314 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 TCEAL9Q9UHQ7 104 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 CFAP45Q9UL16 551 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 MADDQ8WXG6 1647 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 GOLIM4O00461 696 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 ZNF213O14771 459 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 SDSP20132 328 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 TMED8Q6PL24 325 aaPredicted RBP8.1□□□□□ -1.11
SF3B1-201ENST00000335508 PDRG1Q9NUG6 133 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 PLEKHG2Q9H7P9 1386 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 WDHD1O75717 1129 aaPredicted RBP8.1□□□□□ -1.11
SF3B1-201ENST00000335508 BEND3Q5T5X7 828 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 LARP1BQ659C4 914 aaKnown RBP8.1□□□□□ -1.11
SF3B1-201ENST00000335508 CC2D2BQ6DHV5 1058 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 TBC1D9Q6ZT07 1266 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 TBC1D32Q96NH3 1257 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 KIF1BO60333 1816 aa8.1□□□□□ -1.11
SF3B1-201ENST00000335508 NEXMIFQ5QGS0 1516 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 ADGRB1O14514 1584 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 CPDO75976 1380 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 NT5C2P49902 561 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 CERKQ8TCT0 537 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 TBC1D22AQ8WUA7 517 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 PDE4BQ07343 736 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 RRP12Q5JTH9 1297 aaKnown RBP8.09□□□□□ -1.11
SF3B1-201ENST00000335508 PPP1R1BQ9UD71 204 aaPredicted RBP8.09□□□□□ -1.11
SF3B1-201ENST00000335508 GOLGA6L19H0YKK7 550 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 GNAQP50148 359 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 CRNKL1Q9BZJ0 848 aaKnown RBP8.09□□□□□ -1.11
SF3B1-201ENST00000335508 CNNM2Q9H8M5 875 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 PARP3Q9Y6F1 533 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms