RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 NPM2Q86SE8 214 aaKnown RBP12.02□□□□□ -0.48
RFX3-201ENST00000302303 CCDC191Q8NCU4 936 aa12.02□□□□□ -0.48
RFX3-201ENST00000302303 KAZALD1Q96I82 304 aa12.02□□□□□ -0.48
RFX3-201ENST00000302303 MEIS3Q99687 375 aa12.02□□□□□ -0.48
RFX3-201ENST00000302303 PSDA5PKW4 1024 aaPredicted RBP12.01□□□□□ -0.49
RFX3-201ENST00000302303 NTSR2O95665 410 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 HSP90AB3PQ58FF7 597 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 JARID2Q92833 1246 aaPredicted RBP12.01□□□□□ -0.49
RFX3-201ENST00000302303 NIP7Q9Y221 180 aaKnown RBP eCLIP12.01□□□□□ -0.49
RFX3-201ENST00000302303 COL24A1Q17RW2 1714 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 POLRMTO00411 1230 aaKnown RBP12.01□□□□□ -0.49
RFX3-201ENST00000302303 MS4A1P11836 297 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 MSL1Q68DK7 614 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 BICDL1Q6ZP65 573 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 FTSJ3Q8IY81 847 aaKnown RBP12.01□□□□□ -0.49
RFX3-201ENST00000302303 NLGN1Q8N2Q7 840 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 EXOC6Q8TAG9 804 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 SLC16A10Q8TF71 515 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 SGIP1Q9BQI5 828 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 ZBTB40Q9NUA8 1239 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 ZNF652Q9Y2D9 606 aa12.01□□□□□ -0.49
RFX3-201ENST00000302303 GRM8O00222 908 aa12□□□□□ -0.49
RFX3-201ENST00000302303 NEXNQ0ZGT2 675 aa12□□□□□ -0.49
RFX3-201ENST00000302303 ITPRIPQ8IWB1 547 aa12□□□□□ -0.49
RFX3-201ENST00000302303 CWC25Q9NXE8 425 aaPredicted RBP12□□□□□ -0.49
RFX3-201ENST00000302303 PCCAP05165 728 aaPredicted RBP11.99□□□□□ -0.49
RFX3-201ENST00000302303 PARP10Q53GL7 1025 aa11.99□□□□□ -0.49
RFX3-201ENST00000302303 EPHA10Q5JZY3 1008 aa11.99□□□□□ -0.49
RFX3-201ENST00000302303 ZBTB38Q8NAP3 1195 aaPredicted RBP11.99□□□□□ -0.49
RFX3-201ENST00000302303 FAM89AQ96GI7 184 aa11.99□□□□□ -0.49
RFX3-201ENST00000302303 SETDB2Q96T68 719 aa11.99□□□□□ -0.49
RFX3-201ENST00000302303 NRXN2Q9P2S2 1712 aa11.98□□□□□ -0.49
RFX3-201ENST00000302303 MMP10P09238 476 aa11.98□□□□□ -0.49
RFX3-201ENST00000302303 DDX19BQ9UMR2 479 aa11.98□□□□□ -0.49
RFX3-201ENST00000302303 AFDNP55196 1824 aaKnown RBP11.98□□□□□ -0.49
RFX3-201ENST00000302303 FAM177BA6PVY3 158 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 ZBTB7AO95365 584 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 SERPINB2P05120 415 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 PTGER2P43116 358 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 FOXO4P98177 505 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 ERFEQ4G0M1 354 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 RTL5Q5HYW3 569 aaPredicted RBP11.97□□□□□ -0.49
RFX3-201ENST00000302303 SLC10A5Q5PT55 438 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 PRR5LQ6MZQ0 368 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 UBE3BQ7Z3V4 1068 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 NUTM1Q86Y26 1132 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 SUCLG2Q96I99 432 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 UTP14AQ9BVJ6 771 aaKnown RBP11.97□□□□□ -0.49
RFX3-201ENST00000302303 TRMT112Q9UI30 125 aaKnown RBP11.97□□□□□ -0.49
RFX3-201ENST00000302303 CARMIL3Q8ND23 1372 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 ABCC12Q96J65 1359 aa11.97□□□□□ -0.49
RFX3-201ENST00000302303 C3orf67Q6ZVT6 689 aa11.96□□□□□ -0.49
RFX3-201ENST00000302303 SIRT2Q8IXJ6 389 aa11.96□□□□□ -0.49
RFX3-201ENST00000302303 CCDC24Q8N4L8 307 aa11.96□□□□□ -0.49
RFX3-201ENST00000302303 MTFR1LQ9H019 292 aa11.96□□□□□ -0.49
RFX3-201ENST00000302303 PCDHB15Q9Y5E8 787 aa11.96□□□□□ -0.49
RFX3-201ENST00000302303 CDHR2Q9BYE9 1310 aa11.96□□□□□ -0.49
RFX3-201ENST00000302303 SRCAPQ6ZRS2 3230 aa11.96□□□□□ -0.49
RFX3-201ENST00000302303 PPP1R42Q7Z4L9 355 aa11.96□□□□□ -0.5
RFX3-201ENST00000302303 ANKRD44Q8N8A2 993 aa11.96□□□□□ -0.5
RFX3-201ENST00000302303 PLA2G12BQ9BX93 195 aa11.96□□□□□ -0.5
RFX3-201ENST00000302303 C1orf115Q9H7X2 142 aa11.96□□□□□ -0.5
RFX3-201ENST00000302303 C9orf78Q9NZ63 289 aaPredicted RBP11.96□□□□□ -0.5
RFX3-201ENST00000302303 ATF5Q9Y2D1 282 aaPredicted RBP11.96□□□□□ -0.5
RFX3-201ENST00000302303 CSF1RP07333 972 aa11.95□□□□□ -0.5
RFX3-201ENST00000302303 HCLS1P14317 486 aaPredicted RBP11.95□□□□□ -0.5
RFX3-201ENST00000302303 RABL6Q3YEC7 729 aaPredicted RBP11.95□□□□□ -0.5
RFX3-201ENST00000302303 TPTE2Q6XPS3 522 aa11.95□□□□□ -0.5
RFX3-201ENST00000302303 LRRFIP2Q9Y608 721 aaKnown RBP11.95□□□□□ -0.5
RFX3-201ENST00000302303 SH3TC1Q8TE82 1336 aa11.95□□□□□ -0.5
RFX3-201ENST00000302303 DDX60Q8IY21 1712 aaKnown RBP11.95□□□□□ -0.5
RFX3-201ENST00000302303 KLRG2A4D1S0 409 aaPredicted RBP11.94□□□□□ -0.5
RFX3-201ENST00000302303 IRS4O14654 1257 aaPredicted RBP11.94□□□□□ -0.5
RFX3-201ENST00000302303 GNAI3P08754 354 aa11.94□□□□□ -0.5
RFX3-201ENST00000302303 NBPF5PQ86XG9 351 aaPredicted RBP11.94□□□□□ -0.5
RFX3-201ENST00000302303 BICC1Q9H694 974 aaKnown RBP11.94□□□□□ -0.5
RFX3-201ENST00000302303 UBTFL1P0CB47 393 aaPredicted RBP11.93□□□□□ -0.5
RFX3-201ENST00000302303 TTLL11Q8NHH1 800 aa11.93□□□□□ -0.5
RFX3-201ENST00000302303 NYXQ9GZU5 481 aa11.93□□□□□ -0.5
RFX3-201ENST00000302303 COL4A1P02462 1669 aa11.93□□□□□ -0.5
RFX3-201ENST00000302303 TNRC6CQ9HCJ0 1690 aaKnown RBP11.93□□□□□ -0.5
RFX3-201ENST00000302303 RIC1Q4ADV7 1423 aa11.92□□□□□ -0.5
RFX3-201ENST00000302303 GNAI2P04899 355 aa11.92□□□□□ -0.5
RFX3-201ENST00000302303 MTX1Q13505 466 aa11.92□□□□□ -0.5
RFX3-201ENST00000302303 CEP85Q6P2H3 762 aa11.92□□□□□ -0.5
RFX3-201ENST00000302303 CNBD1Q8NA66 436 aa11.92□□□□□ -0.5
RFX3-201ENST00000302303 PARP3Q9Y6F1 533 aa11.92□□□□□ -0.5
RFX3-201ENST00000302303 ANKRD31Q8N7Z5 1873 aa11.92□□□□□ -0.5
RFX3-201ENST00000302303 PNMA6EA0A0J9YXQ4 647 aa11.91□□□□□ -0.5
RFX3-201ENST00000302303 PDE8AO60658 829 aa11.91□□□□□ -0.5
RFX3-201ENST00000302303 RFX5P48382 616 aaPredicted RBP11.91□□□□□ -0.5
RFX3-201ENST00000302303 ATP8B2P98198 1209 aa11.91□□□□□ -0.5
RFX3-201ENST00000302303 SF3B3Q15393 1217 aaKnown RBP11.91□□□□□ -0.5
RFX3-201ENST00000302303 CRY2Q49AN0 593 aa11.91□□□□□ -0.5
RFX3-201ENST00000302303 LMBR1LQ6UX01 489 aa11.91□□□□□ -0.5
RFX3-201ENST00000302303 CTSWP56202 376 aa11.91□□□□□ -0.5
RFX3-201ENST00000302303 BRIP1Q9BX63 1249 aa11.91□□□□□ -0.5
RFX3-201ENST00000302303 LAMB2P55268 1798 aa11.9□□□□□ -0.5
RFX3-201ENST00000302303 C10orf71Q711Q0 1435 aa11.9□□□□□ -0.5
RFX3-201ENST00000302303 IGHDP01880 384 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 278.4 ms