RNA–Protein interactions for RNA: ENST00000300527.8

COL6A2-201, Transcript of collagen type VI alpha 2 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-201ENST00000300527 DLG5Q8TDM6 1919 aa17.3■□□□□ 0.36
COL6A2-201ENST00000300527 CCDC69A6NI79 296 aa17.3■□□□□ 0.36
COL6A2-201ENST00000300527 NMIQ13287 307 aaPredicted RBP17.3■□□□□ 0.36
COL6A2-201ENST00000300527 C11orf57Q6ZUT1 292 aaPredicted RBP17.3■□□□□ 0.36
COL6A2-201ENST00000300527 DDX19AQ9NUU7 478 aaKnown RBP17.3■□□□□ 0.36
COL6A2-201ENST00000300527 PRR36Q9H6K5 1346 aa17.3■□□□□ 0.36
COL6A2-201ENST00000300527 PDCP20941 246 aa17.3■□□□□ 0.36
COL6A2-201ENST00000300527 GTF2E1P29083 439 aaPredicted RBP17.3■□□□□ 0.36
COL6A2-201ENST00000300527 GUCY1B3Q02153 619 aa17.3■□□□□ 0.36
COL6A2-201ENST00000300527 CLSTN2Q9H4D0 955 aa17.3■□□□□ 0.36
COL6A2-201ENST00000300527 FBXO38Q6PIJ6 1188 aa17.29■□□□□ 0.36
COL6A2-201ENST00000300527 ZSWIM6Q9HCJ5 1215 aa17.29■□□□□ 0.36
COL6A2-201ENST00000300527 FRMPD1Q5SYB0 1578 aa17.29■□□□□ 0.36
COL6A2-201ENST00000300527 SLFN14P0C7P3 912 aa17.29■□□□□ 0.36
COL6A2-201ENST00000300527 GPATCH3Q96I76 525 aa17.29■□□□□ 0.36
COL6A2-201ENST00000300527 ATP7BP35670 1465 aa17.29■□□□□ 0.36
COL6A2-201ENST00000300527 PIK3C2BO00750 1634 aa17.29■□□□□ 0.36
COL6A2-201ENST00000300527 ECHDC1Q9NTX5 307 aa17.29■□□□□ 0.36
COL6A2-201ENST00000300527 KIF20BQ96Q89 1820 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 ZNF397Q8NF99 534 aaPredicted RBP17.28■□□□□ 0.36
COL6A2-201ENST00000300527 BRF1Q92994 677 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 PGBD1Q96JS3 809 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 CCDC171Q6TFL3 1326 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 NPHP3Q7Z494 1330 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 GNAT3A8MTJ3 354 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 PLA2G4DQ86XP0 818 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 SIGLEC1Q9BZZ2 1709 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 CHPF2Q9P2E5 772 aa17.28■□□□□ 0.36
COL6A2-201ENST00000300527 GABPB1Q06547 395 aaPredicted RBP17.27■□□□□ 0.36
COL6A2-201ENST00000300527 LRRC8AQ8IWT6 810 aa17.27■□□□□ 0.36
COL6A2-201ENST00000300527 PLCD3Q8N3E9 789 aa17.27■□□□□ 0.36
COL6A2-201ENST00000300527 EDC3Q96F86 508 aaKnown RBP17.27■□□□□ 0.36
COL6A2-201ENST00000300527 NDUFB9Q9Y6M9 179 aa17.27■□□□□ 0.36
COL6A2-201ENST00000300527 POLR3GO15318 223 aaPredicted RBP17.27■□□□□ 0.36
COL6A2-201ENST00000300527 NGDNQ8NEJ9 315 aaKnown RBP17.27■□□□□ 0.36
COL6A2-201ENST00000300527 AOX1Q06278 1338 aa17.27■□□□□ 0.35
COL6A2-201ENST00000300527 ANKRD26Q9UPS8 1709 aa17.27■□□□□ 0.35
COL6A2-201ENST00000300527 TERF2Q15554 542 aa17.27■□□□□ 0.35
COL6A2-201ENST00000300527 SLC27A2O14975 620 aa17.26■□□□□ 0.35
COL6A2-201ENST00000300527 SMC2O95347 1197 aa17.26■□□□□ 0.35
COL6A2-201ENST00000300527 ZRSR1Q15695 479 aaKnown RBP17.26■□□□□ 0.35
COL6A2-201ENST00000300527 HECW2Q9P2P5 1572 aa17.26■□□□□ 0.35
COL6A2-201ENST00000300527 PSMA5P28066 241 aa17.26■□□□□ 0.35
COL6A2-201ENST00000300527 ERCC6LQ2NKX8 1250 aa17.26■□□□□ 0.35
COL6A2-201ENST00000300527 HOMER1Q86YM7 354 aa17.26■□□□□ 0.35
COL6A2-201ENST00000300527 TDRD7Q8NHU6 1098 aaKnown RBP17.26■□□□□ 0.35
COL6A2-201ENST00000300527 AOPEPQ8N6M6 819 aa17.26■□□□□ 0.35
COL6A2-201ENST00000300527 ALKQ9UM73 1620 aa17.26■□□□□ 0.35
COL6A2-201ENST00000300527 METP08581 1390 aa17.25■□□□□ 0.35
COL6A2-201ENST00000300527 IL17REQ8NFR9 667 aa17.25■□□□□ 0.35
COL6A2-201ENST00000300527 CCDC66A2RUB6 948 aa17.25■□□□□ 0.35
COL6A2-201ENST00000300527 AIMP1Q12904 312 aaKnown RBP17.25■□□□□ 0.35
COL6A2-201ENST00000300527 CCAR1Q8IX12 1150 aaKnown RBP17.25■□□□□ 0.35
COL6A2-201ENST00000300527 FAM177A1Q8N128 213 aaPredicted RBP17.25■□□□□ 0.35
COL6A2-201ENST00000300527 DNAAF4Q8WXU2 420 aa17.25■□□□□ 0.35
COL6A2-201ENST00000300527 A0A0D9SFI3 127 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 CCDC73Q6ZRK6 1079 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 BIN1O00499 593 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 HSP90AB4PQ58FF6 505 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 ISM2Q6H9L7 571 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 SYT10Q6XYQ8 523 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 KLHDC4Q8TBB5 520 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 TMX1Q9H3N1 280 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 TMEM51Q9NW97 253 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 RNF20Q5VTR2 975 aa17.24■□□□□ 0.35
COL6A2-201ENST00000300527 KINO60870 393 aaKnown RBP17.23■□□□□ 0.35
COL6A2-201ENST00000300527 ME1P48163 572 aa17.23■□□□□ 0.35
COL6A2-201ENST00000300527 NECTIN1Q15223 517 aa17.23■□□□□ 0.35
COL6A2-201ENST00000300527 CWF19L2Q2TBE0 894 aaKnown RBP17.23■□□□□ 0.35
COL6A2-201ENST00000300527 SDF4Q9BRK5 362 aa17.23■□□□□ 0.35
COL6A2-201ENST00000300527 MORC2Q9Y6X9 1032 aaPredicted RBP17.23■□□□□ 0.35
COL6A2-201ENST00000300527 KCNQ3O43525 872 aa17.23■□□□□ 0.35
COL6A2-201ENST00000300527 TLR7Q9NYK1 1049 aaKnown RBP17.23■□□□□ 0.35
COL6A2-201ENST00000300527 SLU7O95391 586 aaKnown RBP17.23■□□□□ 0.35
COL6A2-201ENST00000300527 TAF3Q5VWG9 929 aa17.23■□□□□ 0.35
COL6A2-201ENST00000300527 LRRN4CLQ8ND94 238 aa17.23■□□□□ 0.35
COL6A2-201ENST00000300527 NLRP6P59044 892 aa17.22■□□□□ 0.35
COL6A2-201ENST00000300527 CCT2P78371 535 aaKnown RBP17.22■□□□□ 0.35
COL6A2-201ENST00000300527 CHGBP05060 677 aa17.22■□□□□ 0.35
COL6A2-201ENST00000300527 SNW1Q13573 536 aaKnown RBP17.22■□□□□ 0.35
COL6A2-201ENST00000300527 POLA2Q14181 598 aa17.22■□□□□ 0.35
COL6A2-201ENST00000300527 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.22■□□□□ 0.35
COL6A2-201ENST00000300527 EVI5LQ96CN4 794 aa17.22■□□□□ 0.35
COL6A2-201ENST00000300527 G3BP1Q13283 466 aaKnown RBP eCLIP17.22■□□□□ 0.35
COL6A2-201ENST00000300527 PTPN21Q16825 1174 aa17.22■□□□□ 0.35
COL6A2-201ENST00000300527 TIGD1Q96MW7 591 aa17.22■□□□□ 0.35
COL6A2-201ENST00000300527 NOL10Q9BSC4 688 aaKnown RBP17.22■□□□□ 0.35
COL6A2-201ENST00000300527 MLH3Q9UHC1 1453 aa17.21■□□□□ 0.35
COL6A2-201ENST00000300527 HTATSF1O43719 755 aaKnown RBP17.21■□□□□ 0.35
COL6A2-201ENST00000300527 CCDC129Q6ZRS4 1044 aa17.21■□□□□ 0.35
COL6A2-201ENST00000300527 TMC6Q7Z403 805 aa17.21■□□□□ 0.35
COL6A2-201ENST00000300527 ZNF589Q86UQ0 364 aaPredicted RBP17.21■□□□□ 0.35
COL6A2-201ENST00000300527 ZFP91Q96JP5 570 aaPredicted RBP17.21■□□□□ 0.35
COL6A2-201ENST00000300527 RPS6KB1P23443 525 aa17.2■□□□□ 0.34
COL6A2-201ENST00000300527 STX1AQ16623 288 aa17.2■□□□□ 0.34
COL6A2-201ENST00000300527 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.2■□□□□ 0.34
COL6A2-201ENST00000300527 MYO5BQ9ULV0 1848 aa17.2■□□□□ 0.34
COL6A2-201ENST00000300527 TTC21AQ8NDW8 1320 aa17.2■□□□□ 0.34
COL6A2-201ENST00000300527 RBM6P78332 1123 aaKnown RBP17.2■□□□□ 0.34
COL6A2-201ENST00000300527 IRX5P78411 483 aaPredicted RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms