RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 WDR17Q8IZU2 1322 aa24.22■■□□□ 1.47
VPS53-201ENST00000291074 CASTP20810 708 aaKnown RBP24.21■■□□□ 1.47
VPS53-201ENST00000291074 NMIQ13287 307 aaPredicted RBP24.21■■□□□ 1.47
VPS53-201ENST00000291074 RBM27Q9P2N5 1060 aaKnown RBP24.21■■□□□ 1.47
VPS53-201ENST00000291074 PLEKHG2Q9H7P9 1386 aa24.21■■□□□ 1.47
VPS53-201ENST00000291074 ADCK5Q3MIX3 580 aa24.21■■□□□ 1.47
VPS53-201ENST00000291074 RUFY3Q7L099 469 aa24.21■■□□□ 1.47
VPS53-201ENST00000291074 RRAGDQ9NQL2 400 aaPredicted RBP24.21■■□□□ 1.47
VPS53-201ENST00000291074 NBPF26B4DH59 902 aa24.2■■□□□ 1.47
VPS53-201ENST00000291074 FOXD4L6Q3SYB3 417 aaPredicted RBP24.2■■□□□ 1.47
VPS53-201ENST00000291074 NBPF14Q5TI25 921 aa24.2■■□□□ 1.47
VPS53-201ENST00000291074 NBPF10Q6P3W6 841 aaKnown RBP24.2■■□□□ 1.47
VPS53-201ENST00000291074 FOXD4L3Q6VB84 417 aaPredicted RBP24.2■■□□□ 1.47
VPS53-201ENST00000291074 NBPF15Q8N660 670 aa24.2■■□□□ 1.47
VPS53-201ENST00000291074 RFX5P48382 616 aaPredicted RBP24.2■■□□□ 1.46
VPS53-201ENST00000291074 ZCRB1Q8TBF4 217 aaKnown RBP24.2■■□□□ 1.46
VPS53-201ENST00000291074 DDX54Q8TDD1 881 aaKnown RBP24.2■■□□□ 1.46
VPS53-201ENST00000291074 NSFL1CQ9UNZ2 370 aaKnown RBP24.2■■□□□ 1.46
VPS53-201ENST00000291074 A0A087WZG4 1122 aa24.19■■□□□ 1.46
VPS53-201ENST00000291074 ZSCAN23Q3MJ62 389 aa24.19■■□□□ 1.46
VPS53-201ENST00000291074 EDC3Q96F86 508 aaKnown RBP24.19■■□□□ 1.46
VPS53-201ENST00000291074 CCDC171Q6TFL3 1326 aa24.19■■□□□ 1.46
VPS53-201ENST00000291074 PCDH11XQ9BZA7 1347 aa24.18■■□□□ 1.46
VPS53-201ENST00000291074 PCDH11YQ9BZA8 1340 aa24.18■■□□□ 1.46
VPS53-201ENST00000291074 PTPN12Q05209 780 aaKnown RBP24.18■■□□□ 1.46
VPS53-201ENST00000291074 JAKMIP1Q96N16 626 aaKnown RBP24.18■■□□□ 1.46
VPS53-201ENST00000291074 COL5A2P05997 1499 aaPredicted RBP24.18■■□□□ 1.46
VPS53-201ENST00000291074 A0A0D9SFI3 127 aa24.18■■□□□ 1.46
VPS53-201ENST00000291074 FSD1Q9BTV5 496 aa24.18■■□□□ 1.46
VPS53-201ENST00000291074 COPRSQ9NQ92 184 aa24.18■■□□□ 1.46
VPS53-201ENST00000291074 DTNBO60941 627 aa24.18■■□□□ 1.46
VPS53-201ENST00000291074 LARGE1O95461 756 aa24.18■■□□□ 1.46
VPS53-201ENST00000291074 PLBD2Q8NHP8 589 aa24.18■■□□□ 1.46
VPS53-201ENST00000291074 TFCP2Q12800 502 aa24.17■■□□□ 1.46
VPS53-201ENST00000291074 TCHHQ07283 1943 aa24.17■■□□□ 1.46
VPS53-201ENST00000291074 RPAP1Q9BWH6 1393 aaPredicted RBP24.17■■□□□ 1.46
VPS53-201ENST00000291074 TTLL7Q6ZT98 887 aa24.17■■□□□ 1.46
VPS53-201ENST00000291074 RBM8AQ9Y5S9 174 aaKnown RBP24.17■■□□□ 1.46
VPS53-201ENST00000291074 DBNLQ9UJU6 430 aaKnown RBP24.16■■□□□ 1.46
VPS53-201ENST00000291074 UBR2Q8IWV8 1755 aa24.16■■□□□ 1.46
VPS53-201ENST00000291074 CASP7P55210 303 aa24.16■■□□□ 1.46
VPS53-201ENST00000291074 NECTIN1Q15223 517 aa24.16■■□□□ 1.46
VPS53-201ENST00000291074 RABL6Q3YEC7 729 aaPredicted RBP24.16■■□□□ 1.46
VPS53-201ENST00000291074 LIMCH1Q9UPQ0 1083 aa24.16■■□□□ 1.46
VPS53-201ENST00000291074 NDUFB9Q9Y6M9 179 aa24.16■■□□□ 1.46
VPS53-201ENST00000291074 A1BGP04217 495 aa24.15■■□□□ 1.46
VPS53-201ENST00000291074 STRN4Q9NRL3 753 aa24.15■■□□□ 1.46
VPS53-201ENST00000291074 SOS2Q07890 1332 aaPredicted RBP24.15■■□□□ 1.46
VPS53-201ENST00000291074 STRCQ7RTU9 1775 aa24.15■■□□□ 1.46
VPS53-201ENST00000291074 ZNF445P59923 1031 aa24.15■■□□□ 1.46
VPS53-201ENST00000291074 COL9A3Q14050 684 aaPredicted RBP24.15■■□□□ 1.46
VPS53-201ENST00000291074 SLAIN2Q9P270 581 aa24.15■■□□□ 1.46
VPS53-201ENST00000291074 ZNF335Q9H4Z2 1342 aaPredicted RBP24.14■■□□□ 1.46
VPS53-201ENST00000291074 ABCA3Q99758 1704 aa24.14■■□□□ 1.46
VPS53-201ENST00000291074 SHANK3Q9BYB0 1731 aa24.14■■□□□ 1.46
VPS53-201ENST00000291074 KCNJ4P48050 445 aa24.14■■□□□ 1.45
VPS53-201ENST00000291074 TNNI3KQ59H18 835 aa24.14■■□□□ 1.45
VPS53-201ENST00000291074 GDPD2Q9HCC8 539 aa24.14■■□□□ 1.45
VPS53-201ENST00000291074 TMEM63CQ9P1W3 806 aa24.14■■□□□ 1.45
VPS53-201ENST00000291074 FPGT-TNNI3KV9GXZ4 949 aa24.14■■□□□ 1.45
VPS53-201ENST00000291074 KCPQ6ZWJ8 1503 aa24.13■■□□□ 1.45
VPS53-201ENST00000291074 CREB3L3Q68CJ9 461 aa24.13■■□□□ 1.45
VPS53-201ENST00000291074 NUP188Q5SRE5 1749 aa24.13■■□□□ 1.45
VPS53-201ENST00000291074 LMBR1LQ6UX01 489 aa24.13■■□□□ 1.45
VPS53-201ENST00000291074 KCNB2Q92953 911 aa24.13■■□□□ 1.45
VPS53-201ENST00000291074 PDRG1Q9NUG6 133 aa24.13■■□□□ 1.45
VPS53-201ENST00000291074 HIP1O00291 1037 aa24.12■■□□□ 1.45
VPS53-201ENST00000291074 MAP4K1Q92918 833 aa24.12■■□□□ 1.45
VPS53-201ENST00000291074 CHMP3Q9Y3E7 222 aa24.12■■□□□ 1.45
VPS53-201ENST00000291074 ZNF589Q86UQ0 364 aaPredicted RBP24.12■■□□□ 1.45
VPS53-201ENST00000291074 ZSWIM6Q9HCJ5 1215 aa24.12■■□□□ 1.45
VPS53-201ENST00000291074 WDR33Q9C0J8 1336 aaKnown RBP24.12■■□□□ 1.45
VPS53-201ENST00000291074 IL2RBP14784 551 aa24.11■■□□□ 1.45
VPS53-201ENST00000291074 NASPP49321 788 aaPredicted RBP24.11■■□□□ 1.45
VPS53-201ENST00000291074 CHGBP05060 677 aa24.11■■□□□ 1.45
VPS53-201ENST00000291074 DBNDD2Q9BQY9 259 aa24.11■■□□□ 1.45
VPS53-201ENST00000291074 ZBTB3Q9H5J0 574 aa24.11■■□□□ 1.45
VPS53-201ENST00000291074 CCDC9Q9Y3X0 531 aaKnown RBP24.11■■□□□ 1.45
VPS53-201ENST00000291074 CYP46A1Q9Y6A2 500 aa24.11■■□□□ 1.45
VPS53-201ENST00000291074 TAF6LQ9Y6J9 622 aa24.11■■□□□ 1.45
VPS53-201ENST00000291074 TJP1Q07157 1748 aa24.11■■□□□ 1.45
VPS53-201ENST00000291074 COL15A1P39059 1388 aa24.11■■□□□ 1.45
VPS53-201ENST00000291074 ERVV-2B6SEH9 535 aa24.1■■□□□ 1.45
VPS53-201ENST00000291074 CCDC83Q8IWF9 413 aa24.1■■□□□ 1.45
VPS53-201ENST00000291074 PAPPAQ13219 1627 aa24.1■■□□□ 1.45
VPS53-201ENST00000291074 MED23Q9ULK4 1368 aa24.1■■□□□ 1.45
VPS53-201ENST00000291074 VPS53Q5VIR6 699 aa24.1■■□□□ 1.45
VPS53-201ENST00000291074 SLC27A2O14975 620 aa24.09■■□□□ 1.45
VPS53-201ENST00000291074 ZKSCAN1P17029 563 aaPredicted RBP24.09■■□□□ 1.45
VPS53-201ENST00000291074 FOXO4P98177 505 aa24.09■■□□□ 1.45
VPS53-201ENST00000291074 PRIM1P49642 420 aaKnown RBP24.09■■□□□ 1.45
VPS53-201ENST00000291074 TM6SF1Q9BZW5 370 aa24.09■■□□□ 1.45
VPS53-201ENST00000291074 SNRKQ9NRH2 765 aa24.09■■□□□ 1.45
VPS53-201ENST00000291074 ERBB4Q15303 1308 aa24.09■■□□□ 1.45
VPS53-201ENST00000291074 ATP5JP18859 108 aa24.08■■□□□ 1.45
VPS53-201ENST00000291074 CARD10Q9BWT7 1032 aa24.08■■□□□ 1.45
VPS53-201ENST00000291074 H7C1W4 665 aa24.08■■□□□ 1.45
VPS53-201ENST00000291074 DNAJC2Q99543 621 aaKnown RBP24.08■■□□□ 1.45
VPS53-201ENST00000291074 SMC3Q9UQE7 1217 aa24.08■■□□□ 1.45
VPS53-201ENST00000291074 ST3GAL1Q11201 340 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms