RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 HS1BP3Q53T59 392 aa10.91□□□□□ -0.66
MSH4-201ENST00000263187 CREB3L3Q68CJ9 461 aa10.91□□□□□ -0.66
MSH4-201ENST00000263187 IP6K1Q92551 441 aa10.91□□□□□ -0.66
MSH4-201ENST00000263187 FBXW7Q969H0 707 aa10.91□□□□□ -0.66
MSH4-201ENST00000263187 PRDM10Q9NQV6 1147 aa10.91□□□□□ -0.66
MSH4-201ENST00000263187 DBF4Q9UBU7 674 aaPredicted RBP10.91□□□□□ -0.66
MSH4-201ENST00000263187 NALCNQ8IZF0 1738 aa10.91□□□□□ -0.66
MSH4-201ENST00000263187 ZKSCAN1P17029 563 aaPredicted RBP10.91□□□□□ -0.66
MSH4-201ENST00000263187 ZNF589Q86UQ0 364 aaPredicted RBP10.91□□□□□ -0.66
MSH4-201ENST00000263187 RGPD1P0DJD0 1748 aa10.91□□□□□ -0.66
MSH4-201ENST00000263187 LIG1P18858 919 aa10.9□□□□□ -0.66
MSH4-201ENST00000263187 DNAJC2Q99543 621 aaKnown RBP10.9□□□□□ -0.66
MSH4-201ENST00000263187 AXIN2Q9Y2T1 843 aa10.9□□□□□ -0.66
MSH4-201ENST00000263187 A0A087WWV3 80 aa10.9□□□□□ -0.66
MSH4-201ENST00000263187 ATP5J2-PTCD1G3V325 749 aa10.9□□□□□ -0.66
MSH4-201ENST00000263187 PTCD1O75127 700 aaKnown RBP10.9□□□□□ -0.66
MSH4-201ENST00000263187 RUFY2Q8WXA3 655 aa10.9□□□□□ -0.66
MSH4-201ENST00000263187 KAZALD1Q96I82 304 aa10.9□□□□□ -0.66
MSH4-201ENST00000263187 SEC62Q99442 399 aaKnown RBP10.9□□□□□ -0.66
MSH4-201ENST00000263187 RNMTO43148 476 aaKnown RBP10.9□□□□□ -0.67
MSH4-201ENST00000263187 GIGYF1O75420 1035 aaPredicted RBP10.9□□□□□ -0.67
MSH4-201ENST00000263187 PLEKHO1Q53GL0 409 aaPredicted RBP10.9□□□□□ -0.67
MSH4-201ENST00000263187 EPHA10Q5JZY3 1008 aa10.9□□□□□ -0.67
MSH4-201ENST00000263187 DDX17Q92841 729 aaKnown RBP10.9□□□□□ -0.67
MSH4-201ENST00000263187 GPATCH3Q96I76 525 aa10.9□□□□□ -0.67
MSH4-201ENST00000263187 PDCL3Q9H2J4 239 aa10.9□□□□□ -0.67
MSH4-201ENST00000263187 CCDC171Q6TFL3 1326 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 JAK2O60674 1132 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 HSP90AB4PQ58FF6 505 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 LUZP1Q86V48 1076 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 SLC27A2O14975 620 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 NOLC1Q14978 699 aaKnown RBP eCLIP10.89□□□□□ -0.67
MSH4-201ENST00000263187 KSR2Q6VAB6 950 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 TTC6Q86TZ1 520 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 MYD88Q99836 296 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 AOX1Q06278 1338 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 GOLGA6L4A6NEF3 574 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 GRM8O00222 908 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 HSP90B1P14625 803 aaKnown RBP10.89□□□□□ -0.67
MSH4-201ENST00000263187 LARP1Q6PKG0 1096 aaKnown RBP10.89□□□□□ -0.67
MSH4-201ENST00000263187 ANKRD24Q8TF21 1146 aa10.89□□□□□ -0.67
MSH4-201ENST00000263187 PIK3C2AO00443 1686 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 GCP02774 474 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 CSPP1Q1MSJ5 1256 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 AKAP4Q5JQC9 854 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 DRC7Q8IY82 874 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 PYCARDQ9ULZ3 195 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 KDM4AO75164 1064 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 FGD1P98174 961 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 NECTIN1Q15223 517 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 NFATC2IPQ8NCF5 419 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 EVI5LQ96CN4 794 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 ZSWIM6Q9HCJ5 1215 aa10.88□□□□□ -0.67
MSH4-201ENST00000263187 VPS53Q5VIR6 699 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 BLOC1S2Q6QNY1 142 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 SASS6Q6UVJ0 657 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 COPS6Q7L5N1 327 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 XAGE3Q8WTP9 111 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 NLRP2Q9NX02 1062 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 DACT1Q9NYF0 836 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 ATP6V1DQ9Y5K8 247 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 IGKV5-2P06315 115 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 DDX46Q7L014 1031 aaKnown RBP10.87□□□□□ -0.67
MSH4-201ENST00000263187 TTC41PQ6P2S7 1318 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 CHST3Q7LGC8 479 aa10.87□□□□□ -0.67
MSH4-201ENST00000263187 ERCC4Q92889 916 aaPredicted RBP10.87□□□□□ -0.67
MSH4-201ENST00000263187 FTOQ9C0B1 505 aaKnown RBP eCLIP10.87□□□□□ -0.67
MSH4-201ENST00000263187 CEMIPQ8WUJ3 1361 aa10.86□□□□□ -0.67
MSH4-201ENST00000263187 GUCY1B3Q02153 619 aa10.86□□□□□ -0.67
MSH4-201ENST00000263187 UBE3BQ7Z3V4 1068 aa10.86□□□□□ -0.67
MSH4-201ENST00000263187 BICD2Q8TD16 824 aa10.86□□□□□ -0.67
MSH4-201ENST00000263187 CABLES1Q8TDN4 633 aa10.86□□□□□ -0.67
MSH4-201ENST00000263187 NRBP1Q9UHY1 535 aa10.86□□□□□ -0.67
MSH4-201ENST00000263187 PXDNQ92626 1479 aa10.86□□□□□ -0.67
MSH4-201ENST00000263187 A0A0G2JLW4 131 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 PTGS1P23219 599 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 TFCP2Q12800 502 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 LRMPQ12912 555 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 SPATA32Q96LK8 384 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 NEUROD6Q96NK8 337 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 FMN2Q9NZ56 1722 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 FAM208AQ9UK61 1670 aaKnown RBP10.85□□□□□ -0.67
MSH4-201ENST00000263187 KRT85P78386 507 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 MAP4K1Q92918 833 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 KCNF1Q9H3M0 494 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 USP16Q9Y5T5 823 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 CCT2P78371 535 aaKnown RBP10.85□□□□□ -0.67
MSH4-201ENST00000263187 ANO6Q4KMQ2 910 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 FAM184AQ8NB25 1140 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 LINS1Q8NG48 757 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 PKNOX2Q96KN3 472 aa10.85□□□□□ -0.67
MSH4-201ENST00000263187 CCDC85AQ96PX6 553 aaPredicted RBP10.85□□□□□ -0.67
MSH4-201ENST00000263187 ZNF330Q9Y3S2 320 aaPredicted RBP10.85□□□□□ -0.67
MSH4-201ENST00000263187 TOPAZ1Q8N9V7 1692 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 CSB-PGBD3P0DP91 1061 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 MCM5P33992 734 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 TOB2Q14106 344 aaPredicted RBP10.84□□□□□ -0.67
MSH4-201ENST00000263187 RAB11FIP4Q86YS3 637 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 TMEM87AQ8NBN3 555 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 NUP62CLQ9H1M0 184 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms