RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 PCCAP05165 728 aaPredicted RBP28.37■■■□□ 2.13
SMARCB1-201ENST00000263121 FAM161AQ3B820 660 aa28.37■■■□□ 2.13
SMARCB1-201ENST00000263121 POTEAQ6S8J7 498 aa28.37■■■□□ 2.13
SMARCB1-201ENST00000263121 RPS6KA4O75676 772 aa28.36■■■□□ 2.13
SMARCB1-201ENST00000263121 FOXO4P98177 505 aa28.36■■■□□ 2.13
SMARCB1-201ENST00000263121 GPTP24298 496 aa28.35■■■□□ 2.13
SMARCB1-201ENST00000263121 C8orf34Q49A92 452 aa28.35■■■□□ 2.13
SMARCB1-201ENST00000263121 HSP90AB4PQ58FF6 505 aa28.35■■■□□ 2.13
SMARCB1-201ENST00000263121 ZBTB38Q8NAP3 1195 aaPredicted RBP28.35■■■□□ 2.13
SMARCB1-201ENST00000263121 SCN7AQ01118 1682 aa28.35■■■□□ 2.13
SMARCB1-201ENST00000263121 UBN2Q6ZU65 1347 aa28.34■■■□□ 2.13
SMARCB1-201ENST00000263121 PLEKHM2Q8IWE5 1019 aa28.34■■■□□ 2.13
SMARCB1-201ENST00000263121 C16orf71Q8IYS4 520 aaPredicted RBP28.34■■■□□ 2.13
SMARCB1-201ENST00000263121 LRRC4BQ9NT99 713 aa28.34■■■□□ 2.13
SMARCB1-201ENST00000263121 RGL2O15211 777 aa28.33■■■□□ 2.13
SMARCB1-201ENST00000263121 RTL5Q5HYW3 569 aaPredicted RBP28.33■■■□□ 2.13
SMARCB1-201ENST00000263121 CDHR2Q9BYE9 1310 aa28.32■■■□□ 2.12
SMARCB1-201ENST00000263121 PLA2G12BQ9BX93 195 aa28.32■■■□□ 2.12
SMARCB1-201ENST00000263121 PA2G4Q9UQ80 394 aaKnown RBP28.32■■■□□ 2.12
SMARCB1-201ENST00000263121 EP400Q96L91 3159 aa28.32■■■□□ 2.12
SMARCB1-201ENST00000263121 RFX5P48382 616 aaPredicted RBP28.32■■■□□ 2.12
SMARCB1-201ENST00000263121 SLC27A3Q5K4L6 730 aa28.32■■■□□ 2.12
SMARCB1-201ENST00000263121 KIF1BPQ96EK5 621 aa28.32■■■□□ 2.12
SMARCB1-201ENST00000263121 GNPATO15228 680 aa28.31■■■□□ 2.12
SMARCB1-201ENST00000263121 LMBR1LQ6UX01 489 aa28.31■■■□□ 2.12
SMARCB1-201ENST00000263121 RHPN1Q8TCX5 695 aa28.31■■■□□ 2.12
SMARCB1-201ENST00000263121 OTUD7AQ8TE49 926 aaPredicted RBP28.31■■■□□ 2.12
SMARCB1-201ENST00000263121 FAM89AQ96GI7 184 aa28.31■■■□□ 2.12
SMARCB1-201ENST00000263121 RBM19Q9Y4C8 960 aaKnown RBP28.31■■■□□ 2.12
SMARCB1-201ENST00000263121 CLEC4GQ6UXB4 293 aa28.3■■■□□ 2.12
SMARCB1-201ENST00000263121 ZNF652Q9Y2D9 606 aa28.3■■■□□ 2.12
SMARCB1-201ENST00000263121 SALL3Q9BXA9 1300 aa28.3■■■□□ 2.12
SMARCB1-201ENST00000263121 COPRSQ9NQ92 184 aa28.29■■■□□ 2.12
SMARCB1-201ENST00000263121 RTCBQ9Y3I0 505 aaKnown RBP28.29■■■□□ 2.12
SMARCB1-201ENST00000263121 PARP10Q53GL7 1025 aa28.28■■■□□ 2.12
SMARCB1-201ENST00000263121 BMP2KLQ5H9B9 411 aa28.28■■■□□ 2.12
SMARCB1-201ENST00000263121 ERC1Q8IUD2 1116 aa28.28■■■□□ 2.12
SMARCB1-201ENST00000263121 PTPN12Q05209 780 aaKnown RBP28.27■■■□□ 2.12
SMARCB1-201ENST00000263121 NARFQ9UHQ1 456 aa28.27■■■□□ 2.12
SMARCB1-201ENST00000263121 TRMT112Q9UI30 125 aaKnown RBP28.27■■■□□ 2.12
SMARCB1-201ENST00000263121 OS9Q13438 667 aaPredicted RBP28.26■■■□□ 2.12
SMARCB1-201ENST00000263121 AMIGO3Q86WK7 504 aa28.26■■■□□ 2.12
SMARCB1-201ENST00000263121 C4AP0C0L4 1744 aa28.26■■■□□ 2.11
SMARCB1-201ENST00000263121 SMIM5Q71RC9 77 aa28.26■■■□□ 2.11
SMARCB1-201ENST00000263121 OSBPL3Q9H4L5 887 aa28.26■■■□□ 2.11
SMARCB1-201ENST00000263121 IL1RAPL2Q9NP60 686 aa28.26■■■□□ 2.11
SMARCB1-201ENST00000263121 G3BP1Q13283 466 aaKnown RBP eCLIP28.25■■■□□ 2.114e-6■■□□□ 12.1
SMARCB1-201ENST00000263121 SUSD4Q5VX71 490 aa28.25■■■□□ 2.11
SMARCB1-201ENST00000263121 SYNE4Q8N205 404 aa28.25■■■□□ 2.11
SMARCB1-201ENST00000263121 KLHDC4Q8TBB5 520 aa28.25■■■□□ 2.11
SMARCB1-201ENST00000263121 AK7Q96M32 723 aa28.25■■■□□ 2.11
SMARCB1-201ENST00000263121 BCL11AQ9H165 835 aa28.25■■■□□ 2.11
SMARCB1-201ENST00000263121 TNS1Q9HBL0 1735 aaKnown RBP28.24■■■□□ 2.11
SMARCB1-201ENST00000263121 UBR3Q6ZT12 1888 aa28.24■■■□□ 2.11
SMARCB1-201ENST00000263121 BCL2L12Q9HB09 334 aa28.24■■■□□ 2.11
SMARCB1-201ENST00000263121 NIP7Q9Y221 180 aaKnown RBP eCLIP28.24■■■□□ 2.11
SMARCB1-201ENST00000263121 PLSCR1O15162 318 aa28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 CSF1RP07333 972 aa28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 TTC22Q5TAA0 569 aa28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 IRS4O14654 1257 aaPredicted RBP28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 SASH1O94885 1247 aa28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 PDE1AP54750 535 aa28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 TXNRD1Q16881 649 aa28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 PROM2Q8N271 834 aa28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 ARHGEF1Q92888 912 aaKnown RBP28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 UTP14AQ9BVJ6 771 aaKnown RBP28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 CHMP3Q9Y3E7 222 aa28.23■■■□□ 2.11
SMARCB1-201ENST00000263121 MYH3P11055 1940 aa28.22■■■□□ 2.11
SMARCB1-201ENST00000263121 GSPT1P15170 499 aaKnown RBP28.22■■■□□ 2.11
SMARCB1-201ENST00000263121 SIL1Q9H173 461 aa28.22■■■□□ 2.11
SMARCB1-201ENST00000263121 NTSR2O95665 410 aa28.21■■■□□ 2.11
SMARCB1-201ENST00000263121 USPL1Q5W0Q7 1092 aa28.21■■■□□ 2.11
SMARCB1-201ENST00000263121 STAP2Q9UGK3 403 aa28.21■■■□□ 2.11
SMARCB1-201ENST00000263121 SH3TC1Q8TE82 1336 aa28.21■■■□□ 2.11
SMARCB1-201ENST00000263121 LAMB2P55268 1798 aa28.2■■■□□ 2.11
SMARCB1-201ENST00000263121 ADRA2BP18089 450 aa28.2■■■□□ 2.11
SMARCB1-201ENST00000263121 MX1P20591 662 aa28.2■■■□□ 2.11
SMARCB1-201ENST00000263121 HMGB2P26583 209 aaKnown RBP28.2■■■□□ 2.11
SMARCB1-201ENST00000263121 SRP68Q9UHB9 627 aaKnown RBP28.2■■■□□ 2.11
SMARCB1-201ENST00000263121 RGPD3A6NKT7 1758 aaPredicted RBP28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 RGPD4Q7Z3J3 1758 aa28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 COL24A1Q17RW2 1714 aa28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 DDX60Q8IY21 1712 aaKnown RBP28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 PDE8AO60658 829 aa28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 ZPR1O75312 459 aa28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 APBA3O96018 575 aa28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 CTSWP56202 376 aa28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 TRAPPC3LQ5T215 181 aa28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 USP42Q9H9J4 1324 aaKnown RBP28.19■■■□□ 2.1
SMARCB1-201ENST00000263121 CLASRPQ8N2M8 674 aaKnown RBP28.18■■■□□ 2.1
SMARCB1-201ENST00000263121 TTLL11Q8NHH1 800 aa28.18■■■□□ 2.1
SMARCB1-201ENST00000263121 AOX1Q06278 1338 aa28.18■■■□□ 2.1
SMARCB1-201ENST00000263121 TBC1D9BQ66K14 1250 aa28.16■■■□□ 2.1
SMARCB1-201ENST00000263121 NUTM1Q86Y26 1132 aa28.16■■■□□ 2.1
SMARCB1-201ENST00000263121 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.16■■■□□ 2.1
SMARCB1-201ENST00000263121 TUBGCP6Q96RT7 1819 aa28.16■■■□□ 2.1
SMARCB1-201ENST00000263121 PHF14O94880 888 aa28.16■■■□□ 2.1
SMARCB1-201ENST00000263121 RFC4P35249 363 aa28.16■■■□□ 2.1
SMARCB1-201ENST00000263121 CCDC57Q2TAC2 916 aa28.16■■■□□ 2.1
SMARCB1-201ENST00000263121 FAM177BA6PVY3 158 aa28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms