RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 CCDC88AQ3V6T2 1871 aa16.54■□□□□ 0.24
SLIRP-201ENST00000238688 NBPF26B4DH59 902 aa16.54■□□□□ 0.24
SLIRP-201ENST00000238688 GNAI3P08754 354 aa16.54■□□□□ 0.24
SLIRP-201ENST00000238688 SNRPA1P09661 255 aaKnown RBP16.54■□□□□ 0.24
SLIRP-201ENST00000238688 NBPF10Q6P3W6 841 aaKnown RBP16.54■□□□□ 0.24
SLIRP-201ENST00000238688 RPAP2Q8IXW5 612 aaPredicted RBP16.54■□□□□ 0.24
SLIRP-201ENST00000238688 SMC5Q8IY18 1101 aa16.54■□□□□ 0.24
SLIRP-201ENST00000238688 NBPF15Q8N660 670 aa16.54■□□□□ 0.24
SLIRP-201ENST00000238688 GCC1Q96CN9 775 aa16.54■□□□□ 0.24
SLIRP-201ENST00000238688 COL11A2P13942 1736 aaPredicted RBP16.53■□□□□ 0.24
SLIRP-201ENST00000238688 FKBP5Q13451 457 aaPredicted RBP16.53■□□□□ 0.24
SLIRP-201ENST00000238688 BICDL1Q6ZP65 573 aa16.53■□□□□ 0.24
SLIRP-201ENST00000238688 ARHGAP27Q6ZUM4 889 aa16.53■□□□□ 0.24
SLIRP-201ENST00000238688 DDX21Q9NR30 783 aaKnown RBP eCLIP16.53■□□□□ 0.24
SLIRP-201ENST00000238688 TSHZ2Q9NRE2 1034 aa16.53■□□□□ 0.24
SLIRP-201ENST00000238688 DDX58O95786 925 aaKnown RBP16.52■□□□□ 0.24
SLIRP-201ENST00000238688 DALRD3Q5D0E6 543 aaKnown RBP16.52■□□□□ 0.24
SLIRP-201ENST00000238688 ZNF330Q9Y3S2 320 aaPredicted RBP16.52■□□□□ 0.24
SLIRP-201ENST00000238688 IGHDP01880 384 aa16.51■□□□□ 0.23
SLIRP-201ENST00000238688 ZNF526Q8TF50 670 aaPredicted RBP16.51■□□□□ 0.23
SLIRP-201ENST00000238688 NUP98P52948 1817 aa16.5■□□□□ 0.23
SLIRP-201ENST00000238688 HMMRO75330 724 aa16.5■□□□□ 0.23
SLIRP-201ENST00000238688 PRR5LQ6MZQ0 368 aa16.5■□□□□ 0.23
SLIRP-201ENST00000238688 DZIP3Q86Y13 1208 aaKnown RBP16.5■□□□□ 0.23
SLIRP-201ENST00000238688 GPBP1L1Q9HC44 474 aaPredicted RBP16.5■□□□□ 0.23
SLIRP-201ENST00000238688 CACNA1SQ13698 1873 aa16.5■□□□□ 0.23
SLIRP-201ENST00000238688 KIF3CO14782 793 aa16.49■□□□□ 0.23
SLIRP-201ENST00000238688 CCDC24Q8N4L8 307 aa16.49■□□□□ 0.23
SLIRP-201ENST00000238688 SLX4Q8IY92 1834 aa16.48■□□□□ 0.23
SLIRP-201ENST00000238688 ALDH1L1O75891 902 aa16.48■□□□□ 0.23
SLIRP-201ENST00000238688 PRELPP51888 382 aa16.48■□□□□ 0.23
SLIRP-201ENST00000238688 CHPF2Q9P2E5 772 aa16.48■□□□□ 0.23
SLIRP-201ENST00000238688 FER1L6Q2WGJ9 1857 aa16.48■□□□□ 0.23
SLIRP-201ENST00000238688 C9orf131Q5VYM1 1079 aa16.47■□□□□ 0.23
SLIRP-201ENST00000238688 G2E3Q7L622 706 aa16.47■□□□□ 0.23
SLIRP-201ENST00000238688 C2CD5Q86YS7 1000 aa16.47■□□□□ 0.23
SLIRP-201ENST00000238688 ANKRD44Q8N8A2 993 aa16.47■□□□□ 0.23
SLIRP-201ENST00000238688 DNAAF4Q8WXU2 420 aa16.47■□□□□ 0.23
SLIRP-201ENST00000238688 ARFGEF2Q9Y6D5 1785 aa16.46■□□□□ 0.23
SLIRP-201ENST00000238688 GNAI2P04899 355 aa16.46■□□□□ 0.23
SLIRP-201ENST00000238688 EIF2S2P20042 333 aaKnown RBP16.46■□□□□ 0.23
SLIRP-201ENST00000238688 CLEC4GQ6UXB4 293 aa16.46■□□□□ 0.23
SLIRP-201ENST00000238688 KSR2Q6VAB6 950 aa16.46■□□□□ 0.23
SLIRP-201ENST00000238688 BRIP1Q9BX63 1249 aa16.46■□□□□ 0.23
SLIRP-201ENST00000238688 SRCIN1Q9C0H9 1055 aa16.46■□□□□ 0.23
SLIRP-201ENST00000238688 DICER1Q9UPY3 1922 aaKnown RBP16.45■□□□□ 0.22
SLIRP-201ENST00000238688 TTLL6Q8N841 843 aa16.45■□□□□ 0.22
SLIRP-201ENST00000238688 SETDB2Q96T68 719 aa16.45■□□□□ 0.22
SLIRP-201ENST00000238688 H0YIN7 160 aa16.44■□□□□ 0.22
SLIRP-201ENST00000238688 RGL2O15211 777 aa16.44■□□□□ 0.22
SLIRP-201ENST00000238688 RASSF7Q02833 373 aa16.44■□□□□ 0.22
SLIRP-201ENST00000238688 HLFQ16534 295 aa16.44■□□□□ 0.22
SLIRP-201ENST00000238688 EIF5BO60841 1220 aaKnown RBP16.43■□□□□ 0.22
SLIRP-201ENST00000238688 NUCB1Q02818 461 aa16.43■□□□□ 0.22
SLIRP-201ENST00000238688 SLC4A10Q6U841 1118 aa16.43■□□□□ 0.22
SLIRP-201ENST00000238688 NFKBIEO00221 500 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 PDE6BP35913 854 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 LRP10Q7Z4F1 713 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 NPM2Q86SE8 214 aaKnown RBP16.42■□□□□ 0.22
SLIRP-201ENST00000238688 CNBD1Q8NA66 436 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 LINS1Q8NG48 757 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 DCTPP1Q9H773 170 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 NMRK2Q9NPI5 230 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 RNF181Q9P0P0 153 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 PDZRN3Q9UPQ7 1066 aa16.42■□□□□ 0.22
SLIRP-201ENST00000238688 PI4KAP2A4QPH2 592 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 UBTFL1P0CB47 393 aaPredicted RBP16.41■□□□□ 0.22
SLIRP-201ENST00000238688 SRGNP10124 158 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 NEXNQ0ZGT2 675 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 PDIA6Q15084 440 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 FAM161AQ3B820 660 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 BEND3Q5T5X7 828 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 CEP85Q6P2H3 762 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 TTLL7Q6ZT98 887 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 PI4KAP1Q8N8J0 262 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 MEIS3Q99687 375 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 PHAXQ9H814 394 aaKnown RBP16.41■□□□□ 0.22
SLIRP-201ENST00000238688 TIAM2Q8IVF5 1701 aa16.41■□□□□ 0.22
SLIRP-201ENST00000238688 TNRC6CQ9HCJ0 1690 aaKnown RBP16.4■□□□□ 0.22
SLIRP-201ENST00000238688 KLRG2A4D1S0 409 aaPredicted RBP16.4■□□□□ 0.22
SLIRP-201ENST00000238688 F6X3S4 739 aa16.4■□□□□ 0.22
SLIRP-201ENST00000238688 ZNF622Q969S3 477 aaKnown RBP eCLIP16.4■□□□□ 0.22
SLIRP-201ENST00000238688 BACH2Q9BYV9 841 aa16.4■□□□□ 0.22
SLIRP-201ENST00000238688 ZBTB47Q9UFB7 747 aaPredicted RBP16.4■□□□□ 0.22
SLIRP-201ENST00000238688 RBM19Q9Y4C8 960 aaKnown RBP16.4■□□□□ 0.22
SLIRP-201ENST00000238688 UTYO14607 1347 aa16.4■□□□□ 0.22
SLIRP-201ENST00000238688 CHD1LQ86WJ1 897 aa16.39■□□□□ 0.21
SLIRP-201ENST00000238688 NECTIN2Q92692 538 aa16.39■□□□□ 0.21
SLIRP-201ENST00000238688 NIP7Q9Y221 180 aaKnown RBP eCLIP16.39■□□□□ 0.21
SLIRP-201ENST00000238688 ZNF652Q9Y2D9 606 aa16.39■□□□□ 0.21
SLIRP-201ENST00000238688 CEP350Q5VT06 3117 aa16.38■□□□□ 0.21
SLIRP-201ENST00000238688 ERVV-1B6SEH8 477 aa16.38■□□□□ 0.21
SLIRP-201ENST00000238688 PDE4AP27815 886 aa16.38■□□□□ 0.21
SLIRP-201ENST00000238688 STYK1Q6J9G0 422 aa16.38■□□□□ 0.21
SLIRP-201ENST00000238688 NBPF5PQ86XG9 351 aaPredicted RBP16.38■□□□□ 0.21
SLIRP-201ENST00000238688 SIRT2Q8IXJ6 389 aa16.38■□□□□ 0.21
SLIRP-201ENST00000238688 USP44Q9H0E7 712 aa16.38■□□□□ 0.21
SLIRP-201ENST00000238688 MAP3K15Q6ZN16 1313 aa16.38■□□□□ 0.21
SLIRP-201ENST00000238688 C21orf2O43822 256 aa16.37■□□□□ 0.21
SLIRP-201ENST00000238688 MYL6BP14649 208 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms