RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 LUZP1Q86V48 1076 aa12.84□□□□□ -0.35
USP28-201ENST00000003302 PDRG1Q9NUG6 133 aa12.84□□□□□ -0.35
USP28-201ENST00000003302 SMC3Q9UQE7 1217 aa12.84□□□□□ -0.35
USP28-201ENST00000003302 NPHP4O75161 1426 aaPredicted RBP12.84□□□□□ -0.35
USP28-201ENST00000003302 NFAT5O94916 1531 aa12.84□□□□□ -0.35
USP28-201ENST00000003302 GCP02774 474 aa12.84□□□□□ -0.35
USP28-201ENST00000003302 LRMPQ12912 555 aa12.84□□□□□ -0.35
USP28-201ENST00000003302 TOB2Q14106 344 aaPredicted RBP12.84□□□□□ -0.35
USP28-201ENST00000003302 RGPD5Q99666 1765 aa12.84□□□□□ -0.35
USP28-201ENST00000003302 LARP1Q6PKG0 1096 aaKnown RBP12.83□□□□□ -0.35
USP28-201ENST00000003302 ECHDC1Q9NTX5 307 aa12.83□□□□□ -0.35
USP28-201ENST00000003302 HTATSF1O43719 755 aaKnown RBP12.83□□□□□ -0.36
USP28-201ENST00000003302 CEBPZQ03701 1054 aaKnown RBP12.83□□□□□ -0.36
USP28-201ENST00000003302 PSME1Q06323 249 aa12.83□□□□□ -0.36
USP28-201ENST00000003302 CRYBG1Q9Y4K1 1723 aa12.83□□□□□ -0.36
USP28-201ENST00000003302 CCDC171Q6TFL3 1326 aa12.83□□□□□ -0.36
USP28-201ENST00000003302 KDM3BQ7LBC6 1761 aa12.83□□□□□ -0.36
USP28-201ENST00000003302 N4BP2Q86UW6 1770 aaPredicted RBP12.83□□□□□ -0.36
USP28-201ENST00000003302 MED1Q15648 1581 aaPredicted RBP12.83□□□□□ -0.36
USP28-201ENST00000003302 VPS53Q5VIR6 699 aa12.83□□□□□ -0.36
USP28-201ENST00000003302 CHST3Q7LGC8 479 aa12.83□□□□□ -0.36
USP28-201ENST00000003302 CLASRPQ8N2M8 674 aaKnown RBP12.83□□□□□ -0.36
USP28-201ENST00000003302 NFATC2IPQ8NCF5 419 aa12.83□□□□□ -0.36
USP28-201ENST00000003302 ZSWIM6Q9HCJ5 1215 aa12.83□□□□□ -0.36
USP28-201ENST00000003302 SLC27A2O14975 620 aa12.82□□□□□ -0.36
USP28-201ENST00000003302 MCM2P49736 904 aa12.82□□□□□ -0.36
USP28-201ENST00000003302 NAA30Q147X3 362 aaPredicted RBP12.82□□□□□ -0.36
USP28-201ENST00000003302 ARHGAP23Q9P227 1491 aa12.82□□□□□ -0.36
USP28-201ENST00000003302 ANKRD24Q8TF21 1146 aa12.82□□□□□ -0.36
USP28-201ENST00000003302 DBNLQ9UJU6 430 aaKnown RBP12.82□□□□□ -0.36
USP28-201ENST00000003302 GLRX3O76003 335 aaKnown RBP12.81□□□□□ -0.36
USP28-201ENST00000003302 IFIT2P09913 472 aaKnown RBP12.81□□□□□ -0.36
USP28-201ENST00000003302 ARID5BQ14865 1188 aa12.81□□□□□ -0.36
USP28-201ENST00000003302 NKX2-3Q8TAU0 364 aa12.81□□□□□ -0.36
USP28-201ENST00000003302 GPHNQ9NQX3 736 aaPredicted RBP12.81□□□□□ -0.36
USP28-201ENST00000003302 GRM8O00222 908 aa12.81□□□□□ -0.36
USP28-201ENST00000003302 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.81□□□□□ -0.36
USP28-201ENST00000003302 DDX46Q7L014 1031 aaKnown RBP12.8□□□□□ -0.36
USP28-201ENST00000003302 COPS6Q7L5N1 327 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 ZNF496Q96IT1 587 aaPredicted RBP12.8□□□□□ -0.36
USP28-201ENST00000003302 DBF4Q9UBU7 674 aaPredicted RBP12.8□□□□□ -0.36
USP28-201ENST00000003302 PXDNLA1KZ92 1463 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 CCDC183Q5T5S1 534 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 KSR2Q6VAB6 950 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 STOX1Q6ZVD7 989 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 XAGE3Q8WTP9 111 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 NR1I2O75469 434 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 CHRNA2Q15822 529 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 MAP4K1Q92918 833 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 PGBD1Q96JS3 809 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 GJB4Q9NTQ9 266 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 TAOK2Q9UL54 1235 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 FER1L4A9Z1Z3 1794 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 UBE2HP62256 183 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 TMEM87AQ8NBN3 555 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 MYD88Q99836 296 aa12.8□□□□□ -0.36
USP28-201ENST00000003302 SLIT1O75093 1534 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 TPM2P07951 284 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 AOX1Q06278 1338 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 KCNJ4P48050 445 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 AKAP4Q5JQC9 854 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 ARHGEF25Q86VW2 580 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 FBXW7Q969H0 707 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 MTX1Q13505 466 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 LARP1BQ659C4 914 aaKnown RBP12.79□□□□□ -0.36
USP28-201ENST00000003302 RAB11FIP4Q86YS3 637 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 DBNDD2Q9BQY9 259 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 DACT1Q9NYF0 836 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 PCNTO95613 3336 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 NOLC1Q14978 699 aaKnown RBP eCLIP12.79□□□□□ -0.36
USP28-201ENST00000003302 HSP90AB3PQ58FF7 597 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 FSD1Q9BTV5 496 aa12.79□□□□□ -0.36
USP28-201ENST00000003302 USP42Q9H9J4 1324 aaKnown RBP12.78□□□□□ -0.36
USP28-201ENST00000003302 KDM4AO75164 1064 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 TFCP2Q12800 502 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 HS1BP3Q53T59 392 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 NCOA5Q9HCD5 579 aaKnown RBP12.78□□□□□ -0.36
USP28-201ENST00000003302 CCDC39Q9UFE4 941 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 CYP46A1Q9Y6A2 500 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 EP400Q96L91 3159 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 PTGS1P23219 599 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 DNTTIP2Q5QJE6 756 aaKnown RBP12.78□□□□□ -0.36
USP28-201ENST00000003302 UBE3BQ7Z3V4 1068 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 LRP10Q7Z4F1 713 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 DNAJC2Q99543 621 aaKnown RBP12.78□□□□□ -0.36
USP28-201ENST00000003302 C5P01031 1676 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 MRVI1Q9Y6F6 885 aa12.78□□□□□ -0.36
USP28-201ENST00000003302 GUCY1B3Q02153 619 aa12.77□□□□□ -0.36
USP28-201ENST00000003302 DENND2AQ9ULE3 1009 aa12.77□□□□□ -0.36
USP28-201ENST00000003302 HEG1Q9ULI3 1381 aa12.77□□□□□ -0.36
USP28-201ENST00000003302 THEMISQ8N1K5 641 aaPredicted RBP12.77□□□□□ -0.36
USP28-201ENST00000003302 NEURL1BA8MQ27 555 aa12.77□□□□□ -0.37
USP28-201ENST00000003302 CYP21A2P08686 494 aa12.77□□□□□ -0.37
USP28-201ENST00000003302 CCDC85AQ96PX6 553 aaPredicted RBP12.77□□□□□ -0.37
USP28-201ENST00000003302 ZNF609O15014 1411 aa12.77□□□□□ -0.37
USP28-201ENST00000003302 TAF5LO75529 589 aa12.77□□□□□ -0.37
USP28-201ENST00000003302 ZNF594Q96JF6 807 aaPredicted RBP12.77□□□□□ -0.37
USP28-201ENST00000003302 TIMM10P62072 90 aa12.76□□□□□ -0.37
USP28-201ENST00000003302 PDCL3Q9H2J4 239 aa12.76□□□□□ -0.37
USP28-201ENST00000003302 KDM6AO15550 1401 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms