RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 HRASLS2Q9NWW9 162 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ADAMTS6Q9UKP5 1117 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 NUP98P52948 1817 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 SIPA1L3O60292 1781 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TRIM64A6NGJ6 449 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 C2CD4DB7Z1M9 353 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 G3V2L1 256 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 AURKAO14965 403 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 AQP9O43315 295 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 CD53P19397 219 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 THBS2P35442 1172 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 MC3RP41968 323 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 GATMP50440 423 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 PPT1P50897 306 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 HK3P52790 923 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 NFATC3Q12968 1075 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 KIR2DS3Q14952 304 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 RGNQ15493 299 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 SPHARQ15513 63 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 BCL2A1Q16548 175 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TAZQ16635 292 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF454Q8N9F8 522 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 CLEC4CQ8WTT0 213 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 CYB5D2Q8WUJ1 264 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 SCRN2Q96FV2 425 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 KCNIP2Q9NS61 270 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 KCNIP1Q9NZI2 227 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 DDX60LQ5H9U9 1706 aaKnown RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TP73O15350 636 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TPT1P13693 172 aaKnown RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 MAGEA12P43365 314 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 OR12D2P58182 307 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 YPEL5P62699 121 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 LDB1Q86U70 411 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 PDZD3Q86UT5 571 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 CNOT9Q92600 299 aaKnown RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 LGALS12Q96DT0 336 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ZFP3Q96NJ6 502 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 FCRL3Q96P31 734 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 QRSL1Q9H0R6 528 aaKnown RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 CLMPQ9H6B4 373 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 A4GALTQ9NPC4 353 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ACSS1Q9NUB1 689 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 RLIMQ9NVW2 624 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 KIR2DS5A0A0G2JLQ3 304 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 A0A0G2JNG1 304 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CPSF4LA6NMK7 179 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 KIR2DS3K7RE56 304 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 MT-ND1P03886 318 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CEBPBP17676 345 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 NELFEP18615 380 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 HOXD13P35453 343 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 NCS1P62166 190 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SLC3A1Q07837 685 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 KIR2DS5Q14953 304 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SPANXN4Q5MJ08 99 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 YOD1Q5VVQ6 348 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SYT14Q8NB59 555 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ZDHHC16Q969W1 377 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 BORCS7Q96B45 105 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PTPN18Q99952 460 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PSD2Q9BQI7 771 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 GOLGA2P5Q9HBQ8 144 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ERVK-18Q9QC07 812 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 MMP17Q9ULZ9 603 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ADAM18Q9Y3Q7 739 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PTPRZ1P23471 2315 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 MARF1Q9Y4F3 1742 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 A8MXE2 369 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 GPRIN2O60269 458 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PDHA2P29803 388 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PBX2P40425 430 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 GPR68Q15743 365 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 C1orf53Q5VUE5 145 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PLAG1Q6DJT9 500 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SMARCD3Q6STE5 483 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 TRIM46Q7Z4K8 759 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CEACAM19Q7Z692 300 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PLPP6Q8IY26 295 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 THEM6Q8WUY1 208 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 PYCR2Q96C36 320 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SLC17A9Q9BYT1 436 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 XYLT2Q9H1B5 865 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 MGAT4CQ9UBM8 478 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 KIF25Q9UIL4 384 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 A0A1B0GVT2 93 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 FBP2O00757 339 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SNAPINO95295 136 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ACP2P11117 423 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ADRB3P13945 408 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 AMY2BP19961 511 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CAPN3P20807 821 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 GDI2P50395 445 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CD83Q01151 205 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 DLX2Q07687 328 aaPredicted RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 CDKN3Q16667 212 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 SCGB2B2Q4G0G5 96 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 HENMT1Q5T8I9 393 aaKnown RBP7.38□□□□□ -1.23
VPS13D-211ENST00000543710 LPCAT3Q6P1A2 487 aa7.38□□□□□ -1.23
VPS13D-211ENST00000543710 ACBD7Q8N6N7 88 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms