RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	CCDC71	Q8IV32	467 aa	Predicted RBP	10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	ZNF808	Q8N4W9	903 aa	Predicted RBP	10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	OR8J2	Q8NGG1	315 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	OR4C3	Q8NH37	302 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	RFWD2	Q8NHY2	731 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	PNPT1	Q8TCS8	783 aa	Known RBP	10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	SFXN5	Q8TD22	340 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	ACTRT2	Q8TDY3	377 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	CA5BP1	Q8WTZ4	195 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	XAGE5	Q8WWM1	108 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	SMPDL3B	Q92485	455 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	RND1	Q92730	232 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	MAGEB18	Q96M61	343 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	SFXN2	Q96NB2	322 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	TRIB1	Q96RU8	372 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	TIMP4	Q99727	224 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	EBF4	Q9BQW3	602 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	SLC35A5	Q9BS91	424 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	INPP5K	Q9BT40	448 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	G6PC3	Q9BUM1	346 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	RTN4R	Q9BZR6	473 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	OR51I1	Q9H343	314 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	PIGU	Q9H490	435 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	PTGES2	Q9H7Z7	377 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	TCF7L2	Q9NQB0	619 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	ZNF446	Q9NWS9	450 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	NTM	Q9P121	344 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	DCTN4	Q9UJW0	460 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	PCDHGB3	Q9Y5G1	929 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	DNAJC13	O75165	2243 aa		10.06	□□□□□ -0.8
DDB1-222	ENST00000543627	CCDC154	A6NI56	674 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	FAM90A27P	A6NNH2	459 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	CYSRT1	A8MQ03	144 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	SHISA8	B8ZZ34	492 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	GTPBP1	O00178	669 aa	Known RBP	10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	ZNF195	O14628	629 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	ADAM10	O14672	748 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	ANKRD28	O15084	1053 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	CYP7B1	O75881	506 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	OXSR1	O95747	527 aa	Predicted RBP	10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	NUDT14	O95848	222 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	PGR	P06401	933 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	IFI6	P09912	130 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	NCF2	P19878	526 aa	Predicted RBP	10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	GAS1	P54826	345 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	NUP107	P57740	925 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	C21orf58	P58505	322 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	C17orf67	Q0P5P2	114 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	GPR68	Q15743	365 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	GSTA3	Q16772	222 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	DPY19L1	Q2PZI1	675 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	FLYWCH1	Q4VC44	716 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	PDCD4	Q53EL6	469 aa	Known RBP	10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	C1orf185	Q5T7R7	199 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	SP5	Q6BEB4	398 aa	Predicted RBP	10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	PPP4R4	Q6NUP7	873 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	TMEM81	Q6P7N7	255 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	XKRX	Q6PP77	449 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	APOOL	Q6UXV4	268 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	C16orf62	Q7Z3J2	963 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	HMGN2P46	Q86SG4	172 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	UBQLNL	Q8IYU4	475 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	LRRC34	Q8IZ02	419 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	MIER2	Q8N344	545 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	OR2M3	Q8NG83	312 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	OR9I1	Q8NGQ6	314 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	PHOSPHO1	Q8TCT1	267 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	RAB8B	Q92930	207 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	TESC	Q96BS2	214 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	DTNBP1	Q96EV8	351 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	STAC	Q99469	402 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	UGT2B28	Q9BY64	529 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	UBQLN3	Q9H347	655 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	NPHS2	Q9NP85	383 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	GPATCH2	Q9NW75	528 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	FAM120C	Q9NX05	1096 aa	Known RBP	10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	VDAC3	Q9Y277	283 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	EXPH5	Q8NEV8	1989 aa		10.05	□□□□□ -0.8
DDB1-222	ENST00000543627	DUXA	A6NLW8	204 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	FAM47E-STBD1	D6RA91	191 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627		H0Y3Z8	333 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627		H3BML4	177 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	RFXANK	O14593	260 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	WDR1	O75083	606 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	OPN1LW	P04000	364 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	VIM	P08670	466 aa	Known RBP	10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	GABRA1	P14867	456 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	HTR1E	P28566	365 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	GRN	P28799	593 aa	Known RBP	10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	SRD5A2	P31213	254 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	MAP3K8	P41279	467 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	CDKN2C	P42773	168 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	POLR2J	P52435	117 aa	Known RBP	10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	DSCR4	P56555	118 aa	Predicted RBP	10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	CRYZ	Q08257	329 aa	Known RBP	10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	CDSN	Q15517	529 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	GPAT3	Q53EU6	434 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	C6orf10	Q5SRN2	563 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	DCST1	Q5T197	706 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	ATAD3B	Q5T9A4	648 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms