RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 OR7D2Q96RA2 312 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 PANX1Q96RD7 426 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 SLC35A5Q9BS91 424 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 TBL1XR1Q9BZK7 514 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 HOXD1Q9GZZ0 328 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 DEFB127Q9H1M4 99 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 LDAHQ9H6V9 325 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 POLE3Q9NRF9 147 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 UBQLN4Q9NRR5 601 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 EXD2Q9NVH0 621 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 PPP4R1LQ9P1A2 415 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 LIPGQ9Y5X9 500 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 HECTD1Q9ULT8 2610 aa10.82□□□□□ -0.68
VPS52-213ENST00000461743 INTS1Q8N201 2190 aaKnown RBP10.82□□□□□ -0.68
VPS52-213ENST00000461743 E9PLN8 166 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 RFXANKO14593 260 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 ADAM10O14672 748 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 GNB5O14775 395 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 LRRTM2O43300 516 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 WDR1O75083 606 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 CPSF4O95639 269 aaKnown RBP10.81□□□□□ -0.68
VPS52-213ENST00000461743 KRT75O95678 551 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 OXSR1O95747 527 aaPredicted RBP10.81□□□□□ -0.68
VPS52-213ENST00000461743 IGKV1D-16P01601 117 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 TPOP07202 933 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 HOXD4P09016 255 aaPredicted RBP10.81□□□□□ -0.68
VPS52-213ENST00000461743 ENDOUP21128 410 aaKnown RBP10.81□□□□□ -0.68
VPS52-213ENST00000461743 MATN1P21941 496 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 PTGER4P35408 488 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 TRPC1P48995 793 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 DGKQP52824 942 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 C17orf67Q0P5P2 114 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 C3AR1Q16581 482 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 GRAMD1BQ3KR37 738 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 TIGD2Q4W5G0 525 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 ATAD3BQ5T9A4 648 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 METTL21CQ5VZV1 264 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 DESI1Q6ICB0 168 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 CD163Q86VB7 1156 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 WDSUB1Q8N9V3 476 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 OR4K17Q8NGC6 315 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 OR9I1Q8NGQ6 314 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 ITCHQ96J02 903 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 VKORC1Q9BQB6 163 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 YIPF4Q9BSR8 244 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 NMUR2Q9GZQ4 415 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 SERHL2Q9H4I8 314 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 CXorf56Q9H5V9 222 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 EXO5Q9H790 373 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 PTGES2Q9H7Z7 377 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 NPHS2Q9NP85 383 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 SERHLQ9NQF3 203 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 TINAGQ9UJW2 476 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 MED12LQ86YW9 2145 aa10.81□□□□□ -0.68
VPS52-213ENST00000461743 CCDC154A6NI56 674 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 CCL21O00585 134 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 SCDO00767 359 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 SCO2O43819 266 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 WISP2O76076 250 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 ANGPTL1O95841 491 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 ACTL6AO96019 429 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 CELA3AP09093 270 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 GABRA1P14867 456 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 HPGDP15428 266 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 AGAP20933 346 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 MSX1P28360 303 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 RFX3P48380 749 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 DSCR4P56555 118 aaPredicted RBP10.8□□□□□ -0.68
VPS52-213ENST00000461743 SF3B4Q15427 424 aaKnown RBP eCLIP10.8□□□□□ -0.682e-26■■■■■ 102.6
VPS52-213ENST00000461743 ARHGAP11BQ3KRB8 267 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 WLSQ5T9L3 541 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 HEPHL1Q6MZM0 1159 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 FIGNL1Q6PIW4 674 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 C16orf62Q7Z3J2 963 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 FJX1Q86VR8 437 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 PM20D2Q8IYS1 436 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 FAM83FQ8NEG4 500 aaPredicted RBP10.8□□□□□ -0.68
VPS52-213ENST00000461743 OR5D16Q8NGK9 328 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 GNRHR2Q96P88 292 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 PHF12Q96QT6 1004 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 ZNF350Q9GZX5 532 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 OR51I1Q9H343 314 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 RAD21L1Q9H4I0 556 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 ZNF385DQ9H6B1 395 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 FGFR1OP2Q9NVK5 253 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 THUMPD1Q9NXG2 353 aaKnown RBP10.8□□□□□ -0.68
VPS52-213ENST00000461743 DKKL1Q9UK85 242 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 MEMO1Q9Y316 297 aa10.8□□□□□ -0.68
VPS52-213ENST00000461743 HCFC1P51610 2035 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 SETXQ7Z333 2677 aaKnown RBP10.79□□□□□ -0.68
VPS52-213ENST00000461743 A0A087WZY1 265 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 A0A0G2JND7 137 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 C9JVG2 144 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 FAM47E-STBD1D6RA91 191 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 NPIPB9F8W1W9 429 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 H3BNH8 94 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 LINC01387J3KSC0 135 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 NDUFB5O43674 189 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 STX11O75558 287 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 TRAPPC6AO75865 159 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms