RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ZNF628Q5EBL2 1059 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 FIGNL1Q6PIW4 674 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 USP53Q70EK8 1073 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 MRGPREQ86SM8 312 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 CAMKVQ8NCB2 501 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 ASB15Q8WXK1 588 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 SAMD8Q96LT4 415 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 CACYBPQ9HB71 228 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 CLDND1Q9NY35 253 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 SYNDIG1LA6NDD5 238 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 URADA6NGE7 173 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 SURF4O15260 269 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 FPR3P25089 353 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 ZNF136P52737 540 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 ILF3Q12906 894 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 HNRNPA0Q13151 305 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 MBOAT2Q6ZWT7 520 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 OSTF1Q92882 214 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 RIPOR3Q96MK2 946 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 FGF20Q9NP95 211 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 WDR70Q9NW82 654 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 HRASLS2Q9NWW9 162 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 CPNE7Q9UBL6 633 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 MUTYHQ9UIF7 546 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 KCNE5Q9UJ90 142 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 VCANP13611 3396 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 KDM4EB2RXH2 506 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 ATP6V1G1O75348 118 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 LALBAP00709 142 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 CTSBP07858 339 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 MSL3P1P0C860 447 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 SDC2P34741 201 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 EEF1A1P68104 462 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 SRSF5Q13243 272 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 CRTC2Q53ET0 693 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 CCBE1Q6UXH8 406 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 WDR88Q6ZMY6 472 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 ZNF620Q6ZNG0 422 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC22A18ASQ8N1D0 253 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 ZFPM2Q8WW38 1151 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 DPH1Q9BZG8 443 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 MCOLN1Q9GZU1 580 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 IL20Q9NYY1 176 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 PTGFRNQ9P2B2 879 aa17.09■□□□□ 0.33
SHKBP1-201ENST00000291842 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 LINC00854A0A1B0GVQ3 168 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 SNTNA6NMZ2 147 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 OR5F1O95221 314 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 CT62P0C5K7 136 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 HTR2AP28223 471 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 STAT5AP42229 794 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 TPTEP56180 551 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 VSX2P58304 361 aaPredicted RBP17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 RUNX1T1Q06455 604 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 DCST2Q5T1A1 773 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 MRPL2Q5T653 305 aaKnown RBP17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 ZC3H14Q6PJT7 736 aaKnown RBP17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 POGLUT1Q8NBL1 392 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 PFN4Q8NHR9 129 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 NR4A3Q92570 626 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 ANKRD19PQ9H560 264 aa17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 MRPS18AQ9NVS2 196 aaKnown RBP17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 C19orf53Q9UNZ5 99 aaPredicted RBP17.08■□□□□ 0.33
SHKBP1-201ENST00000291842 SOCS6O14544 535 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 SNPHO15079 494 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 KLF4O43474 513 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 AGR2O95994 175 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 PTTG1O95997 202 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 AKT2P31751 481 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 CAV3P56539 151 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 DEFB110Q30KQ9 67 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 PGGHGQ32M88 737 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 FHL5Q5TD97 284 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 SMARCD3Q6STE5 483 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 SAMD14Q8IZD0 417 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 CELF2-AS1Q8N7Q2 184 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 COX18Q8N8Q8 333 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 SLC25A46Q96AG3 418 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 NACC2Q96BF6 587 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 GAS2L1Q99501 681 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 ENKD1Q9H0I2 346 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 PIGUQ9H490 435 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 ATP13A2Q9NQ11 1180 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 C20orf141Q9NUB4 165 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 CLCA2Q9UQC9 943 aa17.08■□□□□ 0.32
SHKBP1-201ENST00000291842 TMEM129A0AVI4 362 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 ZC3H12DA2A288 527 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 SGK494L7N484 410 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 AGRPO00253 132 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 TNFRSF10CO14798 259 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 TYRP1P17643 537 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 GABRG2P18507 467 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 ATP6V1E1P36543 226 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 SLC1A3P43003 542 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 BNC1Q01954 994 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 DUSP8Q13202 625 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 C1orf61Q13536 156 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 ZNF791Q3KP31 576 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 SLC35F1Q5T1Q4 408 aa17.07■□□□□ 0.32
SHKBP1-201ENST00000291842 AADACL4Q5VUY2 407 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms