RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.58■□□□□ 0.4
HOXA9-202ENST00000396345 ZNF324BQ6AW86 544 aaPredicted RBP17.58■□□□□ 0.4
HOXA9-202ENST00000396345 DLEU7Q6UYE1 221 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 C16orf62Q7Z3J2 963 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 ZAR1Q86SH2 424 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 RETREG3Q86VR2 466 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 SNX32Q86XE0 403 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 MSRB3Q8IXL7 192 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 CHDHQ8NE62 594 aaPredicted RBP17.58■□□□□ 0.4
HOXA9-202ENST00000396345 OR52N2Q8NGI0 321 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 RNF138Q8WVD3 245 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 JSRP1Q96MG2 331 aaPredicted RBP17.58■□□□□ 0.4
HOXA9-202ENST00000396345 CCDC106Q9BWC9 280 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 TTTY12Q9BZ98 90 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 RAD21L1Q9H4I0 556 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 IL1RL2Q9HB29 575 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 SLC25A37Q9NYZ2 338 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 VAPAQ9P0L0 249 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.58■□□□□ 0.4
HOXA9-202ENST00000396345 BOKQ9UMX3 212 aaPredicted RBP17.58■□□□□ 0.4
HOXA9-202ENST00000396345 ABCG2Q9UNQ0 655 aa17.58■□□□□ 0.4
HOXA9-202ENST00000396345 SPENQ96T58 3664 aaKnown RBP17.57■□□□□ 0.4
HOXA9-202ENST00000396345 LOC100653049A0A140TA62 436 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 ACOT7O00154 380 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 FBP2O00757 339 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 FADS1O60427 444 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 KRT34O76011 436 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 UNC5CO95185 931 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 FAM107AO95990 144 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 CRATP43155 626 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 PPIAP62937 165 aaKnown RBP17.57■□□□□ 0.4
HOXA9-202ENST00000396345 NFYCQ13952 458 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 CYLC2Q14093 348 aaPredicted RBP17.57■□□□□ 0.4
HOXA9-202ENST00000396345 MMEL1Q495T6 779 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 HEPHL1Q6MZM0 1159 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 DHDDSQ86SQ9 333 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 NR4A3Q92570 626 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 NTNG2Q96CW9 530 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 TMEM41AQ96HV5 264 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 ZNF597Q96LX8 424 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 SDF2Q99470 211 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 MYLK2Q9H1R3 596 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 GALNT9Q9HCQ5 603 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 ZFP64Q9NPA5 681 aa17.57■□□□□ 0.4
HOXA9-202ENST00000396345 TRBV5-3A0A0A0MS03 114 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 C2orf72A6NCS6 295 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 FAM166BA8MTA8 275 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 BBIP1A8MTZ0 92 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 TFECO14948 347 aaPredicted RBP17.56■□□□□ 0.4
HOXA9-202ENST00000396345 GLSO94925 669 aaPredicted RBP17.56■□□□□ 0.4
HOXA9-202ENST00000396345 TBXA2RP21731 343 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 PPIBP23284 216 aaKnown RBP17.56■□□□□ 0.4
HOXA9-202ENST00000396345 MST1P26927 711 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 CLK3P49761 638 aaKnown RBP17.56■□□□□ 0.4
HOXA9-202ENST00000396345 MVDP53602 400 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 STX5Q13190 355 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 COQ5Q5HYK3 327 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 SLC22A16Q86VW1 577 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 RP9Q8TA86 221 aaKnown RBP17.56■□□□□ 0.4
HOXA9-202ENST00000396345 MIB2Q96AX9 1013 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 UBQLN4Q9NRR5 601 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 SHANK1Q9Y566 2161 aa17.56■□□□□ 0.4
HOXA9-202ENST00000396345 LRRC3CA6NJW4 275 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 GNB5O14775 395 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 SCO2O43819 266 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 STX11O75558 287 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 OXSR1O95747 527 aaPredicted RBP17.55■□□□□ 0.4
HOXA9-202ENST00000396345 NGFRP08138 427 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 COX4I1P13073 169 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 ETFAP13804 333 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 GAS1P54826 345 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 RGNQ15493 299 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 HYAL4Q2M3T9 481 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 FLYWCH1Q4VC44 716 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 RUNDC3AQ59EK9 446 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 GKAP1Q5VSY0 366 aaPredicted RBP17.55■□□□□ 0.4
HOXA9-202ENST00000396345 REP15Q6BDI9 236 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 TREML1Q86YW5 311 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 SIAH3Q8IW03 269 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 POU5F2Q8N7G0 328 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 OR1J4Q8NGS1 313 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 OR4C3Q8NH37 302 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 ROPN1LQ96C74 230 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 CGREF1Q99674 301 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 SLX1AQ9BQ83 275 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 TBL1XR1Q9BZK7 514 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 HOXD1Q9GZZ0 328 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 TSPAN10Q9H1Z9 355 aaPredicted RBP17.55■□□□□ 0.4
HOXA9-202ENST00000396345 SDHAF3Q9NRP4 125 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 B4GALT7Q9UBV7 327 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 LIPT1Q9Y234 373 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 WIF1Q9Y5W5 379 aa17.55■□□□□ 0.4
HOXA9-202ENST00000396345 NBASA2RRP1 2371 aa17.54■□□□□ 0.4
HOXA9-202ENST00000396345 RP1L1Q8IWN7 2480 aaPredicted RBP17.54■□□□□ 0.4
HOXA9-202ENST00000396345 SVILO95425 2214 aa17.54■□□□□ 0.4
HOXA9-202ENST00000396345 NPIPA5A0A0B4J1W7 369 aa17.54■□□□□ 0.4
HOXA9-202ENST00000396345 EVPLLA8MZ36 301 aa17.54■□□□□ 0.4
HOXA9-202ENST00000396345 NPIPA7E9PJI5 369 aa17.54■□□□□ 0.4
HOXA9-202ENST00000396345 NPIPA5E9PKD4 350 aa17.54■□□□□ 0.4
HOXA9-202ENST00000396345 MRASO14807 208 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms