RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 GKN3PP0CG01 181 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 SMIM10L1P0DMW3 83 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 PRG2P13727 222 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 CPMP14384 443 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 TLX1P31314 330 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 IFNA8P32881 189 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 MAPK14Q16539 360 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 KLHL22Q53GT1 634 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 OR2L13Q8N349 312 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 FLCNQ8NFG4 579 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 SMIM10Q96HG1 83 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC38A2Q96QD8 506 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 MTHFD2LQ9H903 347 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 SP140LQ9H930 580 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 CAPN10Q9HC96 672 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 TXNL4BQ9NX01 149 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 UGT2A1Q9Y4X1 527 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 PIAS3Q9Y6X2 628 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 GON4LQ3T8J9 2241 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 H0YGG7 62 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 CDC42EP2O14613 210 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 SSX4O60224 188 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 CELA2BP08218 269 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 HOXC4P09017 264 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 TSPAN19P0C672 248 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 FUT1P19526 365 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 ARF3P61204 181 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 PPP1CAP62136 330 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 ZMAT1Q5H9K5 638 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 Q6ZSR6 202 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 LAX1Q8IWV1 398 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 PEX5LQ8IYB4 626 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 BBS1Q8NFJ9 593 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 OR4F15Q8NGB8 312 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 ACOT11Q8WXI4 607 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 OTULINQ96BN8 352 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 TM9SF2Q99805 663 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 SCML1Q9UN30 329 aa17.12■□□□□ 0.33
SHKBP1-201ENST00000291842 FGF17O60258 216 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 RORCP51449 518 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 WNT4P56705 351 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 RPS25P62851 125 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 RNLSQ5VYX0 342 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 DESI1Q6ICB0 168 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 SDF2Q99470 211 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 FBRSQ9HAH7 460 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 CRNNQ9UBG3 495 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 MSRAQ9UJ68 235 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 PILRAQ9UKJ1 303 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 ZNF232Q9UNY5 417 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC22A7Q9Y694 548 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 CSNK1G3Q9Y6M4 447 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 BRWD1Q9NSI6 2320 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 TCRBV21S2A2A0A5A6 115 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 TNFSF14O43557 240 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 CPEP16870 476 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 RAB40BQ12829 278 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 CDC20Q12834 499 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 HTR4Q13639 388 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 EXOSC7Q15024 291 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 ARHGAP11BQ3KRB8 267 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 C3orf38Q5JPI3 329 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 B3GLCTQ6Y288 498 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 SPATC1Q76KD6 591 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 LAPTM4BQ86VI4 370 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 OR8H2Q8N162 312 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 RERGQ96A58 199 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 C1GALT1C1Q96EU7 318 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 ZFYVE21Q9BQ24 234 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 INIPQ9NRY2 104 aa17.11■□□□□ 0.33
SHKBP1-201ENST00000291842 PEX12O00623 359 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 NT5EP21589 574 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 AZGP1P25311 298 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 CDH11P55287 796 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 SHC2P98077 582 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 ADAM15Q13444 863 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 MADCAM1Q13477 382 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 LARS2Q15031 903 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 DECR1Q16698 335 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 HSDL2Q6YN16 418 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 GDPGP1Q6ZNW5 385 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 ABHD13Q7L211 337 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 GDPD3Q7L5L3 318 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 ZNF438Q7Z4V0 828 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 GJD3Q8N144 294 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 SYT14Q8NB59 555 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 OR13H1Q8NG92 308 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 HMGB4Q8WW32 186 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 ASB12Q8WXK4 309 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 TRIM45Q9H8W5 580 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 CPNE5Q9HCH3 593 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 NTMQ9P121 344 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 A0A075B6Q4 140 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 FAM183AA6NL82 134 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 HCRTR1O43613 425 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 LIMS3P0CW19 117 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 LIMS4P0CW20 117 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 ETV6P41212 452 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 RFX3P48380 749 aa17.1■□□□□ 0.33
SHKBP1-201ENST00000291842 MINDY4Q4G0A6 757 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms