RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SOX30O94993 753 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 CBX6O95503 412 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 MAGEA8P43361 318 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 FADDQ13158 208 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 SELPLGQ14242 412 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 ATAD3BQ5T9A4 648 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 DESI1Q6ICB0 168 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 C16orf62Q7Z3J2 963 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 GOLM1Q8NBJ4 401 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 MFRPQ9BY79 579 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 EXD2Q9NVH0 621 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 EVPLLA8MZ36 301 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 ABCB7O75027 752 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 IL33O95760 270 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 PSMD4P55036 377 aaKnown RBP27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 DSTNP60981 165 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 FUT5Q11128 374 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 C10orf111Q8N326 155 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 TMEM125Q96AQ2 219 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 SGCZQ96LD1 299 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 HES7Q9BYE0 225 aa27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 CHCHD2Q9Y6H1 151 aaPredicted RBP27.23■■□□□ 1.95
LIMCH1-211ENST00000509638 ART3Q13508 389 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 NANOGP8Q6NSW7 305 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 PSD4Q8NDX1 1056 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 THUMPD3Q9BV44 507 aaKnown RBP27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 NANOGQ9H9S0 305 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 TRAV17A0A0B4J275 112 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 TP53I11O14683 189 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 CCL3P10147 92 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 PNLIPRP2P54317 469 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 RABL3Q5HYI8 236 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 HEPHL1Q6MZM0 1159 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 Q6ZS92 163 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 CHDHQ8NE62 594 aaPredicted RBP27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 FAM110BQ8TC76 370 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 HGDQ93099 445 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 C5orf34Q96MH7 638 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 SH2D2AQ9NP31 389 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 TIMMDC1Q9NPL8 285 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 KLHL1Q9NR64 748 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 FBXO34Q9NWN3 711 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 B3GNT3Q9Y2A9 372 aa27.22■■□□□ 1.95
LIMCH1-211ENST00000509638 CHD6Q8TD26 2715 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 AK1P00568 194 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 CYP4B1P13584 511 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 CD46P15529 392 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 GPX2P18283 190 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 EFR3AQ14156 821 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 ZNF169Q14929 603 aaPredicted RBP27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 CPEB4Q17RY0 729 aaKnown RBP eCLIP27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 NADK2Q4G0N4 442 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 ZNF766Q5HY98 468 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 SLC6A19Q695T7 634 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 ZAR1Q86SH2 424 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 OR8J3Q8NGG0 315 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 PAQR8Q8TEZ7 354 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 G6PC3Q9BUM1 346 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 P2RX2Q9UBL9 471 aa27.21■■□□□ 1.95
LIMCH1-211ENST00000509638 ICOSLGO75144 302 aa27.2■■□□□ 1.94
LIMCH1-211ENST00000509638 NUDT7P0C024 238 aa27.2■■□□□ 1.94
LIMCH1-211ENST00000509638 ARHGAP11BQ3KRB8 267 aa27.2■■□□□ 1.94
LIMCH1-211ENST00000509638 HACD2Q6Y1H2 254 aa27.2■■□□□ 1.94
LIMCH1-211ENST00000509638 NUP54Q7Z3B4 507 aa27.2■■□□□ 1.94
LIMCH1-211ENST00000509638 PRAMEF27A3QJZ7 478 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 ATXN7O15265 892 aaPredicted RBP27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 HS6ST1O60243 411 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 TNFRSF21O75509 655 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 ESRRAP11474 423 aaPredicted RBP27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 BMP2P12643 396 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 ATP6V1C1P21283 382 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 SLC6A2P23975 617 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 HPCAP84074 193 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 PRAMEF20Q5VT98 475 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 OLIG3Q7RTU3 272 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 FBXW8Q8N3Y1 598 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 SPPL2AQ8TCT8 520 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 SCMH1Q96GD3 660 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 NODALQ96S42 347 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 SDF2Q99470 211 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 THUMPD1Q9NXG2 353 aaKnown RBP27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 FLRT3Q9NZU0 649 aa27.19■■□□□ 1.94
LIMCH1-211ENST00000509638 NME2P1O60361 137 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 SP1P08047 785 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 NME2P22392 152 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 RPP38P78345 283 aaKnown RBP27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 SYPL1Q16563 259 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 GPAT3Q53EU6 434 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 GCNT6Q5T4J0 391 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 SLC22A10Q63ZE4 541 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 BICRALQ6AI39 1079 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 MAL2Q969L2 176 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 TMCO6Q96DC7 493 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 SECISBP2Q96T21 854 aaKnown RBP27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 SH3GL1Q99961 368 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 GPATCH1Q9BRR8 931 aaKnown RBP27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 ZNF350Q9GZX5 532 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 KAT8Q9H7Z6 458 aaKnown RBP27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 SACM1LQ9NTJ5 587 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 LUZP4Q9P127 313 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms