RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 TUBA1CQ9BQE3 449 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 FUZQ9BT04 418 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 PINK1Q9BXM7 581 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 CALML5Q9NZT1 146 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 NDOR1Q9UHB4 597 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 RARRES3Q9UL19 164 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 A4GNTQ9UNA3 340 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 WDFY3Q8IZQ1 3526 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 ATP1B1P05026 303 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 H1F0P07305 194 aaKnown RBP21.07■□□□□ 0.96
CDX1-201ENST00000231656 ELAVL4P26378 380 aaKnown RBP21.07■□□□□ 0.96
CDX1-201ENST00000231656 TTKP33981 857 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 E2F1Q01094 437 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 CHRNEQ04844 493 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 PIGFQ07326 219 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 SYT16Q17RD7 645 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 ATAD3BQ5T9A4 648 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 YOD1Q5VVQ6 348 aaPredicted RBP21.07■□□□□ 0.96
CDX1-201ENST00000231656 WDR53Q7Z5U6 358 aaPredicted RBP21.07■□□□□ 0.96
CDX1-201ENST00000231656 ALDH16A1Q8IZ83 802 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 PARP8Q8N3A8 854 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 SLC16A11Q8NCK7 471 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 ADAMTS15Q8TE58 950 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 UBE2FQ969M7 185 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 ZNF556Q9HAH1 456 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 MAU2Q9Y6X3 613 aa21.07■□□□□ 0.96
CDX1-201ENST00000231656 DUXAA6NLW8 204 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 PROB1E7EW31 1015 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 DSCR3O14972 297 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 XPNPEP2O43895 674 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 ZIC2O95409 532 aaPredicted RBP21.06■□□□□ 0.96
CDX1-201ENST00000231656 RNH1P13489 461 aaKnown RBP21.06■□□□□ 0.96
CDX1-201ENST00000231656 SLC5A2P31639 672 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 CCKBRP32239 447 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 SEC23BQ15437 767 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 EXOSC6Q5RKV6 272 aaKnown RBP21.06■□□□□ 0.96
CDX1-201ENST00000231656 ENTHD1Q8IYW4 607 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 PEX11GQ96HA9 241 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 QRSL1Q9H0R6 528 aaKnown RBP21.06■□□□□ 0.96
CDX1-201ENST00000231656 CXorf21Q9HAI6 301 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 TOR4AQ9NXH8 423 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 C19orf53Q9UNZ5 99 aaPredicted RBP21.06■□□□□ 0.96
CDX1-201ENST00000231656 SLC9A8Q9Y2E8 581 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 DMXL1Q9Y485 3027 aa21.06■□□□□ 0.96
CDX1-201ENST00000231656 EFCAB7A8K855 629 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 WBP4O75554 376 aaKnown RBP21.05■□□□□ 0.96
CDX1-201ENST00000231656 AGR2O95994 175 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 GASTP01350 101 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 INSM1Q01101 510 aaPredicted RBP21.05■□□□□ 0.96
CDX1-201ENST00000231656 LSAMPQ13449 338 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 TRMT12Q53H54 448 aaKnown RBP21.05■□□□□ 0.96
CDX1-201ENST00000231656 C16orf62Q7Z3J2 963 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 CLVS1Q8IUQ0 354 aaPredicted RBP21.05■□□□□ 0.96
CDX1-201ENST00000231656 GALNT15Q8N3T1 639 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 APH1BQ8WW43 257 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 ANKRD9Q96BM1 317 aaPredicted RBP21.05■□□□□ 0.96
CDX1-201ENST00000231656 DUSP21Q9H596 190 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 APMAPQ9HDC9 416 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 VCX3AQ9NNX9 186 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 CDC14AQ9UNH5 594 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 SRPK3Q9UPE1 567 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 A0A087WV62 115 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 A0A1B0GX78 115 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 SYT5O00445 386 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 TIAF1O95411 115 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 ALPPP05187 535 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 IFI6P09912 130 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 ACP2P11117 423 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 OR1D4P47884 311 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 TRIP6Q15654 476 aaKnown RBP21.05■□□□□ 0.96
CDX1-201ENST00000231656 FGD3Q5JSP0 725 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 PWWP2BQ6NUJ5 590 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 PPP1R3BQ86XI6 285 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 BMPERQ8N8U9 685 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 OR6T1Q8NGN1 323 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 OR13F1Q8NGS4 319 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 OR51Q1Q8NH59 317 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 CDS1Q92903 461 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 GTPBP3Q969Y2 492 aaKnown RBP21.05■□□□□ 0.96
CDX1-201ENST00000231656 NODALQ96S42 347 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 TMCC3Q9ULS5 477 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 RNF6Q9Y252 685 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 PCDHGA1Q9Y5H4 931 aa21.05■□□□□ 0.96
CDX1-201ENST00000231656 ENO4A6NNW6 628 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 PTGES3LE9PB15 166 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 ZNF701M0R085 212 aaPredicted RBP21.04■□□□□ 0.96
CDX1-201ENST00000231656 FAAHO00519 579 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 SLITRK5O94991 958 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 OXSR1O95747 527 aaPredicted RBP21.04■□□□□ 0.96
CDX1-201ENST00000231656 SMIM11AP58511 58 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 SLC35A2P78381 396 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 MGAT2Q10469 447 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 NPTX1Q15818 432 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 SMN1Q16637 294 aaKnown RBP21.04■□□□□ 0.96
CDX1-201ENST00000231656 DCST1Q5T197 706 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 RHBDD2Q6NTF9 364 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 KLHL17Q6TDP4 642 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 ZNF675Q8TD23 568 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 ADAMTS18Q8TE60 1221 aa21.04■□□□□ 0.96
CDX1-201ENST00000231656 ZDHHC19Q8WVZ1 309 aaPredicted RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms