RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 IQCGQ9H095 443 aaKnown RBP17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 C1orf109Q9NX04 203 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 MKS1Q9NXB0 559 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 MRTO4Q9UKD2 239 aaKnown RBP17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 CCL27Q9Y4X3 112 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 POLR3HQ9Y535 204 aaPredicted RBP17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 MPDZO75970 2070 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 C2orf72A6NCS6 295 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 AZIN1O14977 448 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 ZWINTO95229 277 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 IL18BPO95998 194 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 CHEK2O96017 543 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 NEFHP12036 1026 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 BMP5P22003 454 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 PSG6Q00889 435 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 KIAA0040Q15053 153 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 ZNHIT3Q15649 155 aaPredicted RBP17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 IFNEQ86WN2 208 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 OR2L13Q8N349 312 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 NAXEQ8NCW5 288 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 RNASE6Q93091 150 aaKnown RBP17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 ZFP3Q96NJ6 502 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 AMDHD1Q96NU7 426 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 UCN2Q96RP3 112 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 TRIB1Q96RU8 372 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 GLIPR2Q9H4G4 154 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 TAS2R10Q9NYW0 307 aa17.35■□□□□ 0.37
CCDC28A-203ENST00000617445 PSMG1O95456 288 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 CHMP24386 653 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 CTSSP25774 331 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 OPRM1P35372 400 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 MC3RP41968 323 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 KIR2DL3P43628 341 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 PSMD4P55036 377 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 EEF1A1P68104 462 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 ZNF155Q12901 538 aaPredicted RBP17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 EEF1A1P5Q5VTE0 462 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 C10orf107Q8IVU9 208 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 TRIM42Q8IWZ5 723 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 C4orf33Q8N1A6 199 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 RELL2Q8NC24 303 aaPredicted RBP17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 ELP4Q96EB1 424 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 TM9SF2Q99805 663 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 C3orf14Q9HBI5 128 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 LRTM1Q9HBL6 345 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 Q9N2J8 555 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 TNFRSF12AQ9NP84 129 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 SDHAF3Q9NRP4 125 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 DDX18Q9NVP1 670 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 ABCG2Q9UNQ0 655 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 TMED5Q9Y3A6 229 aa17.34■□□□□ 0.37
CCDC28A-203ENST00000617445 AKAP6Q13023 2319 aa17.33■□□□□ 0.37
CCDC28A-203ENST00000617445 UPK1AO00322 258 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 TBX19O60806 448 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 NUDT17P0C025 328 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 GRK2P25098 689 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 UQCRC1P31930 480 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 CLK3P49761 638 aaKnown RBP17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 ZNF136P52737 540 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 GAS1P54826 345 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 GFRA1P56159 465 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 BCL2A1Q16548 175 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 DECR1Q16698 335 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 PRSS53Q2L4Q9 553 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 DCST1Q5T197 706 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 CLEC6AQ6EIG7 209 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 POMZP3Q6PJE2 187 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 TMEM107Q6UX40 140 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 TMEM200AQ86VY9 491 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 KIF18BQ86Y91 864 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 EFHD2Q96C19 240 aaPredicted RBP17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 APOPT1Q96IL0 206 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 FCRL1Q96LA6 429 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 CCT7Q99832 543 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 SH3GL2Q99962 352 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 GATA5Q9BWX5 397 aaPredicted RBP17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 C12orf65Q9H3J6 166 aaKnown RBP17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 ACBD3Q9H3P7 528 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 EML4Q9HC35 981 aaKnown RBP17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 HHATLQ9HCP6 504 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 ITGB1BP2Q9UKP3 347 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 CBLCQ9ULV8 474 aa17.33■□□□□ 0.36
CCDC28A-203ENST00000617445 TLDC2A0PJX2 215 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 H0Y3Z8 333 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 NPHS1O60500 1241 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 FGF4P08620 206 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 DDX5P17844 614 aaKnown RBP17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 EVI2BP34910 448 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 DSCR4P56555 118 aaPredicted RBP17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 PCLAFQ15004 111 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 Q6ZSR9 355 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 ADGRE4PQ86SQ3 457 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 BANPQ8N9N5 519 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 OR4K17Q8NGC6 315 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 OR4N2Q8NGD1 307 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 FAM222BQ8WU58 562 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 WNT2BQ93097 391 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 LMF2Q9BU23 707 aaKnown RBP17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 ROPN1BQ9BZX4 212 aaPredicted RBP17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 ROPN1Q9HAT0 212 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms