RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 CCL27Q9Y4X3 112 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 EP300Q09472 2414 aaPredicted RBP2.43□□□□□ -2.02
SCFD1-219ENST00000556413 SPTBN4Q9H254 2564 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 WDR87Q6ZQQ6 2873 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ESYT2A0FGR8 921 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ARHGEF35A5YM69 484 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 NKX6-3A6NJ46 265 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CCDC169A6NNP5 214 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 A8MVM7 634 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 PRSS46E5RG02 174 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 E9PMD0 336 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CPLX1O14810 134 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 SLC30A4O14863 429 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 INPP4BO15327 924 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 SLC16A4O15374 487 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 PRB1P04280 392 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 HOXC4P09017 264 aaPredicted RBP2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CCDC192P0DO97 292 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CXCL8P10145 99 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CD1DP15813 335 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 IFNAR1P17181 557 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ERCC2P18074 760 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 GIFP27352 417 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 GNA11P29992 359 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 KRT20P35900 424 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ARL2P36404 184 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 TNFSF9P41273 254 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 RGRP47804 291 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 KDSRQ06136 332 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 PPP2R5CQ13362 524 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 GIT2Q14161 759 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 RBBP7Q16576 425 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 SPANXN4Q5MJ08 99 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 TTC27Q6P3X3 843 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 MOXD1Q6UVY6 613 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 BTNL8Q6UX41 500 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CACUL1Q86Y37 369 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ZNF713Q8N859 430 aaPredicted RBP2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CCDC63Q8NA47 563 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ATAD1Q8NBU5 361 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ZBTB44Q8NCP5 570 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CNNM3Q8NE01 707 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 OR6T1Q8NGN1 323 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 OR10T2Q8NGX3 314 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 OCC1Q8TAD7 63 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CCDC12Q8WUD4 166 aaPredicted RBP2.43□□□□□ -2.02
SCFD1-219ENST00000556413 RLN3Q8WXF3 142 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 FER1L6-AS2Q96M78 137 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 MBOAT7Q96N66 472 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 RANBP9Q96S59 729 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 RIT2Q99578 217 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 IL12RB2Q99665 862 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 SLC25A23Q9BV35 468 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 PAPOLGQ9BWT3 736 aaKnown RBP2.43□□□□□ -2.02
SCFD1-219ENST00000556413 TRIM9Q9C026 710 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 SNX25Q9H3E2 840 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 RNF121Q9H920 327 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 PDRG1Q9NUG6 133 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CHCHD3Q9NX63 227 aaKnown RBP2.43□□□□□ -2.02
SCFD1-219ENST00000556413 DHRS4-AS1Q9P1J3 65 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 MTRRQ9UBK8 725 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 FBXL5Q9UKA1 691 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ANGPTL2Q9UKU9 493 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 ZNF346Q9UL40 294 aaKnown RBP2.43□□□□□ -2.02
SCFD1-219ENST00000556413 RAB23Q9ULC3 237 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 SPATA2Q9UM82 520 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 SMG1Q96Q15 3661 aaKnown RBP2.43□□□□□ -2.02
SCFD1-219ENST00000556413 FAM186AA6NE01 2351 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 CACNA1GO43497 2377 aa2.43□□□□□ -2.02
SCFD1-219ENST00000556413 LOC400499M0QZD8 3231 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 RIF1Q5UIP0 2472 aaKnown RBP2.42□□□□□ -2.02
SCFD1-219ENST00000556413 MYO10Q9HD67 2058 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 NID2Q14112 1375 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 SMIM28A0A1B0GU29 152 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 A0A1W2PPW3 197 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 WI2-2373I1.2A0A1W2PRP0 233 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 SPECC1L-ADORA2AF8WAN1 911 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 ZNF263O14978 683 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 MLNRO43193 412 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 NEMFO60524 1076 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 ECI2O75521 394 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 RECQL5O94762 991 aaPredicted RBP2.42□□□□□ -2.02
SCFD1-219ENST00000556413 KBTBD11O94819 623 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 DEXIO95424 95 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 YES1P07947 543 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 RETP07949 1114 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 LBPP18428 481 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 ATF6P18850 670 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 PSMB4P28070 264 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 GABRR2P28476 465 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 FCGR2BP31994 310 aaPredicted RBP2.42□□□□□ -2.02
SCFD1-219ENST00000556413 FCGR2CP31995 323 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 CCT6AP40227 531 aaKnown RBP2.42□□□□□ -2.02
SCFD1-219ENST00000556413 CXCL12P48061 93 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 DHPSP49366 369 aaPredicted RBP2.42□□□□□ -2.02
SCFD1-219ENST00000556413 NUMBP49757 651 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 NT5C2P49902 561 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 RAD23AP54725 363 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 MFAP3P55082 362 aa2.42□□□□□ -2.02
SCFD1-219ENST00000556413 PEX3P56589 373 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms