RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 WDR55Q9H6Y2 383 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 CLN6Q9NWW5 311 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 WSB2Q9NYS7 404 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 EBF1Q9UH73 591 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 WDR45Q9Y484 360 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 MRC1P22897 1456 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ST8SIA5O15466 376 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 MAGEB4O15481 346 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 EDF1O60869 148 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 PIAS2O75928 621 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CLDN14O95500 239 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 H2BFMP0C1H6 154 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 DEFA4P12838 97 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 BCKDHBP21953 392 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LIPAP38571 399 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 RGS6P49758 472 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 NDUFA8P51970 172 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 TLE3Q04726 772 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PPP3CAQ08209 521 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 TIGD2Q4W5G0 525 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FIGNQ5HY92 759 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 HBMQ6B0K9 141 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CCDC144NLQ6NUI1 221 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SHFQ7M4L6 423 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 RDH10Q8IZV5 341 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LRRC25Q8N386 305 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 C3orf58Q8NDZ4 430 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LNX1Q8TBB1 728 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 ACTL9Q8TC94 416 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 IGDCC4Q8TDY8 1250 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 MTFMTQ96DP5 389 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 FAM129BQ96TA1 746 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ZNF639Q9UID6 485 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 NUP50Q9UKX7 468 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PPM1HQ9ULR3 514 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 B3GNT3Q9Y2A9 372 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 RAXQ9Y2V3 346 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PHYHO14832 338 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PGRMC2O15173 223 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CHRM4P08173 479 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 S1PR1P21453 382 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 MPSTP25325 297 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ARR3P36575 388 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ETV3P41162 512 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 GALNT1Q10472 559 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 MOGSQ13724 837 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PFKFB4Q16877 469 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ISXQ2M1V0 245 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 COL28A1Q2UY09 1125 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 FAM205BPQ63HN1 556 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 GLB1L2Q8IW92 636 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 OR52E4Q8NGH9 312 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 OR56B2PQ8NGI1 322 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 FAM222BQ8WU58 562 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZNF416Q9BWM5 594 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PRDM9Q9NQV7 894 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 THYN1Q9P016 225 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 LEF1Q9UJU2 399 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 SATB2Q9UPW6 733 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CACNA1EQ15878 2313 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 TRBV23-1A0A0A0MS06 115 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 LOC100289279A0A1B0GTE1 492 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 MYADML2A6NDP7 307 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 OTOL1A6NHN0 477 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 CD8B2A6NJW9 211 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZNF670-ZNF695F2Z2N8 137 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 DNASE2O00115 360 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 LATO43561 262 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PIP5K1CO60331 668 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SEC14L2O76054 403 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 JTBO76095 146 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 OR5F1O95221 314 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SERPINA5P05154 406 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ACVR2AP27037 513 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PEX2P28328 305 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 NME5P56597 212 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CLDN2P57739 230 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 C17orf67Q0P5P2 114 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SF3A3Q12874 501 aaKnown RBP eCLIP3.86□□□□□ -1.79
USH2A-202ENST00000366942 RBM39Q14498 530 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 PDCD1Q15116 288 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CNN3Q15417 329 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 FAHD2BQ6P2I3 314 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 C16orf47Q6ZP98 133 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 VASH2Q86V25 355 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZNF101Q8IZC7 436 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 APCDD1Q8J025 514 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZNF676Q8N7Q3 588 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PNPLA1Q8N8W4 532 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 C7orf43Q8WVR3 580 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ASB12Q8WXK4 309 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 FAHD2AQ96GK7 314 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 GPR78Q96P69 363 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 DHRS9Q9BPW9 319 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 MCRIP2Q9BUT9 160 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 CNTNAP3Q9BZ76 1288 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ST6GALNAC4Q9H4F1 302 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZCCHC4Q9H5U6 513 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 RPF2Q9H7B2 306 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZMAT4Q9H898 229 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms