RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 CHP1Q99653 195 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 APOOQ9BUR5 198 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 CALN1Q9BXU9 219 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 TSPY26PQ9H489 355 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 DENND2DQ9H6A0 471 aaPredicted RBP3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 MBNL1Q9NR56 388 aaKnown RBP3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 ETNK2Q9NVF9 386 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZNHIT6Q9NWK9 470 aaKnown RBP3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 SPASTQ9UBP0 616 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 TBC1D29Q9UFV1 150 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 RPL26L1Q9UNX3 145 aaKnown RBP3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 ITM2BQ9Y287 266 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 CA5BQ9Y2D0 317 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 U3KQA8 63 aa3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 FASNP49327 2511 aaKnown RBP3.32□□□□□ -1.88
CKS1BP3-201ENST00000600888 CELSR3Q9NYQ7 3312 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 A0A087WV48 116 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 TEX13DA0A0J9YY54 714 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 MFSD11O43934 449 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 SDC3O75056 442 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 TSPAN9O75954 239 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 RECQL5O94762 991 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 PGLSO95336 258 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 TNFP01375 233 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 TUBBP07437 444 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 CD48P09326 243 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ALPIP09923 528 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 CCNB1P14635 433 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZNF30P17039 623 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 MSH3P20585 1137 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 CA4P22748 312 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 TCEA1P23193 301 aaKnown RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 KDELR1P24390 212 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 GCH1P30793 250 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 CDKN1AP38936 164 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 SLC1A1P43005 524 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 SLC15A1P46059 708 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 MMP15P51511 669 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 KIAA1024LP59773 190 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 IFI35P80217 286 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 PPARDQ03181 441 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 DNAJC3Q13217 504 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZNF235Q14590 738 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 IRF4Q15306 451 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ELOCQ15369 112 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 TAZQ16635 292 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ANKRD20A8PQ5CZ79 823 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 TPRG1LQ5T0D9 272 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 CFAP58Q5T655 872 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ARMC12Q5T9G4 340 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 HES3Q5TGS1 186 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 PNCKQ6P2M8 343 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 C17orf82Q86X59 251 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 CCDC170Q8IYT3 715 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 LSMEM2Q8N112 164 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 NDUFAF2Q8N183 169 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 C17orf53Q8N3J3 647 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ATPAF2Q8N5M1 289 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 PQLC3Q8N755 202 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 TC2NQ8N9U0 490 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 KCTD6Q8NC69 237 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 OR6C4Q8NGE1 309 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 OR56A4Q8NGH8 313 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 PIH1D2Q8WWB5 315 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 NAT6Q93015 286 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 NXPE2Q96DL1 559 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 STAMBPL1Q96FJ0 436 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZNF354BQ96LW1 612 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 CCDC42Q96M95 316 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 RNF157Q96PX1 679 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 IL12RB2Q99665 862 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 LRRC61Q9BV99 259 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 POLR1EQ9GZS1 481 aaKnown RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 PPIL3Q9H2H8 161 aaKnown RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 NHEJ1Q9H9Q4 299 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZBTB20Q9HC78 741 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 NFKBIL1Q9UBC1 381 aaPredicted RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 APOBEC3BQ9UH17 382 aaKnown RBP3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 DNPEPQ9ULA0 475 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 PLAGL1Q9UM63 463 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 JRKLQ9Y4A0 524 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 LAMA5O15230 3695 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 SEC16AO15027 2179 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 SDK2Q58EX2 2172 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 PCM1Q15154 2024 aa3.31□□□□□ -1.88
CKS1BP3-201ENST00000600888 A0A0J9YYE9 177 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 OR2A25A4D2G3 310 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 RGSL1A5PLK6 1076 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 BTNL10A8MVZ5 291 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 CACNB4O00305 520 aaPredicted RBP3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 NTN3O00634 580 aaPredicted RBP3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 CTDSP2O14595 271 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 PSTPIP1O43586 416 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 GPR137BO60478 399 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 NEBLO76041 1014 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 LDLRP01130 860 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 EPOP01588 193 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 TRBC1P01850 177 aa3.3□□□□□ -1.88
CKS1BP3-201ENST00000600888 AMBPP02760 352 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms