RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MFSD4BQ5TF39 518 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 KIF18BQ86Y91 864 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 LRR1Q96L50 414 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 TAPBPLQ9BX59 468 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 TMEM168Q9H0V1 697 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 SRMSQ9H3Y6 488 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 ANKHQ9HCJ1 492 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 POLMQ9NP87 494 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 GIMAP4Q9NUV9 329 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 CNIH4Q9P003 139 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 GPR52Q9Y2T5 361 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 LSM2Q9Y333 95 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 RPL36Q9Y3U8 105 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 A0A087WUU8 490 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 UPK1BO75841 260 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 SLITRK5O94991 958 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 ZIC2O95409 532 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 PORP16435 677 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 S100A5P33763 92 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 PCYT1AP49585 367 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 ANXA11P50995 505 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 TGM3Q08188 693 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 SPHARQ15513 63 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 FAM111BQ6SJ93 734 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 SRFBP1Q8NEF9 429 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 TMEM74BQ9NUR3 256 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF229Q9UJW7 825 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 MKLN1Q9UL63 735 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 CHST2Q9Y4C5 530 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 TICRRQ7Z2Z1 1910 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 KCNJ13O60928 360 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 HBQ1P09105 142 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 TRHRP34981 398 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 DEFB134Q4QY38 66 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SYT14P1Q58G82 188 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 C1orf94Q6P1W5 598 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 C19orf48Q6RUI8 117 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 PRICKLE2Q7Z3G6 844 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 C16orf62Q7Z3J2 963 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 PAQR7Q86WK9 346 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 LYSMD2Q8IV50 215 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 TMEFF1Q8IYR6 380 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 CADM3Q8N126 398 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 PARP16Q8N5Y8 322 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 OR10G6Q8NH81 332 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 HTRA1Q92743 480 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SIPA1Q96FS4 1042 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SCARF2Q96GP6 870 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SARGQ9BW04 601 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 PINK1Q9BXM7 581 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 NXF2Q9GZY0 626 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 C3orf14Q9HBI5 128 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SEMA4GQ9NTN9 838 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 OR6C2Q9NZP2 312 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 CCDC59Q9P031 241 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 CARD8Q9Y2G2 431 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 HEBP2Q9Y5Z4 205 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 RASGRP1O95267 797 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 ALPPP05187 535 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SCG5P05408 212 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 NR2F6P10588 404 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 ACSL1P33121 698 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 PDX1P52945 283 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SIM1P81133 766 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 DLX2Q07687 328 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 GNA13Q14344 377 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SNAPC1Q16533 368 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 CLEC12AQ5QGZ9 265 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 STEAP3Q658P3 488 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 FBXO42Q6P3S6 717 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 NRROSQ86YC3 692 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SLC16A11Q8NCK7 471 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 OR7G2Q8NG99 324 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 TRMT61AQ96FX7 289 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SLC35A4Q96G79 324 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 GABRG3Q99928 467 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 RERGLQ9H628 205 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 SLC13A4Q9UKG4 626 aa17.22■□□□□ 0.35
SHKBP1-201ENST00000291842 PNMA8CA0A1B0GUJ8 204 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF860A6NHJ4 632 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 CTDSP2O14595 271 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 P2RX6O15547 441 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 RHAGQ02094 409 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 ID2Q02363 134 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 NCF4Q15080 339 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 MEDAGQ5VYS4 303 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 ASPGQ86U10 573 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 SLC9A6Q92581 669 aa17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 FAM46AQ96IP4 442 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 POLR2J2Q9GZM3 115 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-201ENST00000291842 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 CASC3O15234 703 aaKnown RBP17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 CTSVO60911 334 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 CYP7B1O75881 506 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 ALDH6A1Q02252 535 aaKnown RBP17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 COX10Q12887 443 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 TIMM50Q3ZCQ8 353 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 PRRT3Q5FWE3 981 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 LIPKQ5VXJ0 399 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 FAM131CQ96AQ9 280 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms