RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZDHHC21Q8IVQ6 265 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 CCDC36Q8IYA8 594 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 ZNF614Q8N883 585 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 LHX4Q969G2 390 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 HPDLQ96IR7 371 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 TBCDQ9BTW9 1192 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 RBM4Q9BWF3 364 aaKnown RBP6.12□□□□□ -1.43
NUP54-215ENST00000514313 RMND5AQ9H871 391 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 BARHL2Q9NY43 387 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 ATAD2BQ9ULI0 1458 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 SNX6Q9UNH7 406 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 EXOGQ9Y2C4 368 aaKnown RBP6.12□□□□□ -1.43
NUP54-215ENST00000514313 SYNJ2O15056 1496 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 TTC26A0AVF1 554 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 LRRC30A6NM36 301 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 GPR89AB7ZAQ6 455 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 WASH3PC4AMC7 463 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 K7EQG2 157 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 RANBP6O60518 1105 aaKnown RBP6.11□□□□□ -1.43
NUP54-215ENST00000514313 SNAP91O60641 907 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 MFN2O95140 757 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 ECDO95905 644 aaPredicted RBP6.11□□□□□ -1.43
NUP54-215ENST00000514313 SLC35G4P0C7Q5 338 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 GPR89BP0CG08 455 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 CLUP10909 449 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 HTR2AP28223 471 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 NOP14P78316 857 aaKnown RBP6.11□□□□□ -1.43
NUP54-215ENST00000514313 FKBP3Q00688 224 aaKnown RBP6.11□□□□□ -1.43
NUP54-215ENST00000514313 MUC21Q5SSG8 566 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 KDELC1Q6UW63 502 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 WASH2PQ6VEQ5 465 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 NUFIP2Q7Z417 695 aaKnown RBP6.11□□□□□ -1.43
NUP54-215ENST00000514313 LCA5Q86VQ0 697 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 ZNF781Q8N8C0 355 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 SSC4DQ8WTU2 575 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 BIRC7Q96CA5 298 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 AGAP4Q96P64 663 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 DUX3Q96PT4 197 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 GPR174Q9BXC1 333 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 COG4Q9H9E3 785 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 SCRT2Q9NQ03 307 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 FAM114A2Q9NRY5 505 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 C1orf123Q9NWV4 160 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 THYN1Q9P016 225 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 MBD2Q9UBB5 411 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 EMCNQ9ULC0 261 aa6.11□□□□□ -1.43
NUP54-215ENST00000514313 A0A0J9YVX5 310 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 FBLL1A6NHQ2 334 aaKnown RBP6.1□□□□□ -1.43
NUP54-215ENST00000514313 ARHGEF33A8MVX0 844 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 K7ERI5 159 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 EDIL3O43854 480 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 FRAT2O75474 233 aaPredicted RBP6.1□□□□□ -1.43
NUP54-215ENST00000514313 TOXO94900 526 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 CHRNA1P02708 482 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 GSTT2P0CG29 244 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 GSTT2BP0CG30 244 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 ACADVLP49748 655 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 NUCB2P80303 420 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 NECTIN1Q15223 517 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 CDKN3Q16667 212 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 CCDC57Q2TAC2 916 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 DCAF4L1Q3SXM0 396 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 PNCKQ6P2M8 343 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 ADAMTSL5Q6ZMM2 481 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 MOB2Q70IA6 237 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 CCDC71Q8IV32 467 aaPredicted RBP6.1□□□□□ -1.43
NUP54-215ENST00000514313 ZNF606Q8WXB4 792 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 STRADBQ9C0K7 418 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 WWOXQ9NZC7 414 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 THEGQ9P2T0 379 aa6.1□□□□□ -1.43
NUP54-215ENST00000514313 IGHV4-30-2A0A087WSY4 118 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 LRIT2A6NDA9 550 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 EI24O14681 340 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 TBX19O60806 448 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 PGFP49763 221 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 GBX2P52951 348 aaPredicted RBP6.09□□□□□ -1.43
NUP54-215ENST00000514313 HNRNPA0Q13151 305 aaKnown RBP6.09□□□□□ -1.43
NUP54-215ENST00000514313 FASTKD3Q14CZ7 662 aaKnown RBP6.09□□□□□ -1.43
NUP54-215ENST00000514313 ZNF146Q15072 292 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 PDK4Q16654 411 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 POM121L1PQ3SYA9 428 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 LCE1AQ5T7P2 110 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 ATAD3BQ5T9A4 648 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 LEG1Q6P5S2 330 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 CASC1Q6TDU7 716 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 ZNF841Q6ZN19 808 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 NET1Q7Z628 596 aaPredicted RBP6.09□□□□□ -1.43
NUP54-215ENST00000514313 ZNF248Q8NDW4 579 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 OR52M1Q8NGK5 317 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 OR1B1Q8NGR6 318 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 DLX4Q92988 240 aaPredicted RBP6.09□□□□□ -1.43
NUP54-215ENST00000514313 ADIPOR1Q96A54 375 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 PRICKLE1Q96MT3 831 aaPredicted RBP6.09□□□□□ -1.43
NUP54-215ENST00000514313 TTC25Q96NG3 672 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 ST6GALNAC5Q9BVH7 336 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 GSDMCQ9BYG8 508 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 NT5C3AQ9H0P0 336 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 UPF3AQ9H1J1 476 aaKnown RBP6.09□□□□□ -1.43
NUP54-215ENST00000514313 MOB1AQ9H8S9 216 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 IL1RL2Q9HB29 575 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms