RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PSMG2Q969U7 264 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 COL26A1Q96A83 441 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ACTR6Q9GZN1 396 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 TMEM168Q9H0V1 697 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 ELOVL6Q9H5J4 265 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 TRMT13Q9NUP7 481 aaKnown RBP5.06□□□□□ -1.6
SYNE1-220ENST00000471834 SOHLH2Q9NX45 425 aa5.06□□□□□ -1.6
SYNE1-220ENST00000471834 PSIP1O75475 530 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 LYPD3O95274 346 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TRBC1P01850 177 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SMPD1P17405 629 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 RPL3P39023 403 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 DUSP3P51452 185 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PRKAG1P54619 331 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FRG2Q64ET8 278 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SLCO4C1Q6ZQN7 724 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MOB3CQ70IA8 216 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 LINGO2Q7L985 606 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 RABEPKQ7Z6M1 372 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FAM129CQ86XR2 697 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MCATQ8IVS2 390 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 NPAS3Q8IXF0 933 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 UBE2J2Q8N2K1 259 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CADM2Q8N3J6 435 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 KLHDC9Q8NEP7 349 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 OR2T4Q8NH00 348 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MYLPFQ96A32 169 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 EXOC2Q96KP1 924 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FRG2BQ96QU4 278 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CCM2Q9BSQ5 444 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PPA2Q9H2U2 334 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF282Q9UDV7 671 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF107Q9UII5 783 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SLC6A14Q9UN76 642 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 YBX2Q9Y2T7 364 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 COL4A3Q01955 1670 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SLC5A10A0PJK1 596 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PRAMEF27A3QJZ7 478 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 OR51F1A6NGY5 319 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PLD2O14939 933 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 DOK2O60496 412 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 RGS11O94810 467 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 JMJD7P0C870 316 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CDC42P60953 191 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SKP1P63208 163 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SPIBQ01892 262 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MAB21L1Q13394 359 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TUSC1Q2TAM9 212 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 NOMO2Q5JPE7 1267 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FAM219BQ5XKK7 198 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 HLA-DQA1Q5Y7H0 255 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FAM83HQ6ZRV2 1179 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SLITRK4Q8IW52 837 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CFAP52Q8N1V2 620 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MS4A4AQ96JQ5 239 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 BHLHE41Q9C0J9 482 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SMG9Q9H0W8 520 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SCP2D1Q9UJQ7 156 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MAFFQ9ULX9 164 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 KCNE2Q9Y6J6 123 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 A0A1B0GTI1 187 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SYN3O14994 580 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PLGP00747 810 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TGFB1P01137 390 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 DBTP11182 482 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 S100A3P33764 101 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 NUDT6P53370 316 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SCRN3Q0VDG4 424 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 KLF9Q13886 244 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 GUCA2BQ16661 112 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF425Q6IV72 752 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SYT12Q8IV01 421 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 LGI4Q8N135 537 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SLC43A3Q8NBI5 491 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 GPR156Q8NFN8 814 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 OR11G2Q8NGC1 345 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 OR5T2Q8NGG2 359 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 LKAAEAR1Q8TD35 194 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 GEMIN6Q8WXD5 167 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 POLR2J2Q9GZM3 115 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 POLR2J3Q9H1A7 115 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 C1orf198Q9H425 327 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TMEM100Q9NV29 134 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PDP1Q9P0J1 537 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SUSD2Q9UGT4 822 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF223Q9UK11 482 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 A0A1B0GUH1 482 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SNRPGP15A8MWD9 76 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 DNASE2O00115 360 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MYL12BO14950 172 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 INSIG1O15503 277 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FMO6PO60774 539 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ACP2P11117 423 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FOLR2P14207 255 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 HOXA1P49639 335 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CCR4P51679 360 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FXYD6P3P58550 94 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TAB1Q15750 504 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 STK11Q15831 433 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ZDHHC20Q5W0Z9 365 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms