RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NIPAL3Q6P499 406 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 LRRC8BQ6P9F7 803 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 CES3Q6UWW8 571 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 GDPGP1Q6ZNW5 385 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 P4HA3Q7Z4N8 544 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 LHFPL4Q7Z7J7 247 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 DENND6BQ8NEG7 585 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 FBXO30Q8TB52 745 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 SPPL2AQ8TCT8 520 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 PINX1Q96BK5 328 aaKnown RBP6.15□□□□□ -1.42
NUP54-215ENST00000514313 C4orf36Q96KX1 117 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 ANKRD27Q96NW4 1050 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 VPS35Q96QK1 796 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 TESK2Q96S53 571 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 CPXM1Q96SM3 734 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 APOOQ9BUR5 198 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 LIME1Q9H400 295 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 RPAP3Q9H6T3 665 aaPredicted RBP6.15□□□□□ -1.42
NUP54-215ENST00000514313 ALG9Q9H6U8 611 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 GPR83Q9NYM4 423 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 CHRNA9Q9UGM1 479 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 B9D1Q9UPM9 204 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 GAB2Q9UQC2 676 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 H0YL77 283 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 MBD3O95983 291 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 OAS1P00973 400 aaKnown RBP6.14□□□□□ -1.43
NUP54-215ENST00000514313 GSTA1P08263 222 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 DRD5P21918 477 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 PSMA5P28066 241 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 HTR5AP47898 357 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 FASTKQ14296 549 aaKnown RBP6.14□□□□□ -1.43
NUP54-215ENST00000514313 NADK2Q4G0N4 442 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 ASPHD2Q6ICH7 369 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 CBLN3Q6UW01 205 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 LPCAT2Q7L5N7 544 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 CENPSQ8N2Z9 138 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 ZNRF1Q8ND25 227 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 OR4F17Q8NGA8 305 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.14□□□□□ -1.43
NUP54-215ENST00000514313 ART5Q96L15 291 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 VSTM2LQ96N03 204 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 OR4F4Q96R69 305 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 TMEM117Q9H0C3 514 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 NT5DC2Q9H857 520 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 TRPV5Q9NQA5 729 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 DEPPQ9NTK1 212 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 NDE1Q9NXR1 346 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 CUX2O14529 1486 aa6.14□□□□□ -1.43
NUP54-215ENST00000514313 MEX3AA1L020 520 aaKnown RBP6.13□□□□□ -1.43
NUP54-215ENST00000514313 PRR23AA6NEV1 266 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 IGLON5A6NGN9 336 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 MPHOSPH10O00566 681 aaKnown RBP6.13□□□□□ -1.43
NUP54-215ENST00000514313 TRAFD1O14545 582 aaPredicted RBP6.13□□□□□ -1.43
NUP54-215ENST00000514313 CYB561D2O14569 222 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 OR9G9P0C7N8 305 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 FOSL2P15408 326 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 AXLP30530 894 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 EMC2Q15006 297 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 MOGAT2Q3SYC2 334 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 SLC36A3Q495N2 470 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 NCR3LG1Q68D85 454 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 DMKNQ6E0U4 476 aaPredicted RBP6.13□□□□□ -1.43
NUP54-215ENST00000514313 ZNF562Q6V9R5 426 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 VPS36Q86VN1 386 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 CBWD2Q8IUF1 395 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 EFCAB13Q8IY85 973 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 METTL4Q8N3J2 472 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 NFAM1Q8NET5 270 aaPredicted RBP6.13□□□□□ -1.43
NUP54-215ENST00000514313 NABP1Q96AH0 204 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 TSPAN18Q96SJ8 248 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 MYCBPQ99417 103 aaPredicted RBP6.13□□□□□ -1.43
NUP54-215ENST00000514313 LGMNQ99538 433 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 PARLQ9H300 379 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 AGPAT5Q9NUQ2 364 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 TAS2R16Q9NYV7 291 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 THAP10Q9P2Z0 257 aaPredicted RBP6.13□□□□□ -1.43
NUP54-215ENST00000514313 PURGQ9UJV8 347 aaKnown RBP6.13□□□□□ -1.43
NUP54-215ENST00000514313 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.13□□□□□ -1.43
NUP54-215ENST00000514313 SLC9A8Q9Y2E8 581 aa6.13□□□□□ -1.43
NUP54-215ENST00000514313 H3BTX0 84 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 IMPA2O14732 288 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 TFECO14948 347 aaPredicted RBP6.12□□□□□ -1.43
NUP54-215ENST00000514313 XPO1O14980 1071 aaKnown RBP6.12□□□□□ -1.43
NUP54-215ENST00000514313 ALOX15BO15296 676 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 GMFGO60234 142 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 SF3B1O75533 1304 aaKnown RBP eCLIP6.12□□□□□ -1.433e-9■■■■■ 206.8
NUP54-215ENST00000514313 CCDC159P0C7I6 412 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 PAX7P23759 505 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 UCP1P25874 307 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 CYLC1P35663 651 aaPredicted RBP6.12□□□□□ -1.43
NUP54-215ENST00000514313 NAPAP54920 295 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 TMEM50BP56557 158 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 MRPS6P82932 125 aaKnown RBP6.12□□□□□ -1.43
NUP54-215ENST00000514313 ZP4Q12836 540 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 CALCOCO2Q13137 446 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 ZNF311Q5JNZ3 666 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 ATRAIDQ6UW56 229 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 RGS9BPQ6ZS82 235 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 LUZP1Q86V48 1076 aa6.12□□□□□ -1.43
NUP54-215ENST00000514313 ZFAND4Q86XD8 727 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms