RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ZCCHC10Q8TBK6 192 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 GEMIN6Q8WXD5 167 aaKnown RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 KLHL6Q8WZ60 621 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 ZNF300Q96RE9 604 aaPredicted RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 ZNF347Q96SE7 839 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 ROGDIQ9GZN7 287 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 RBM38Q9H0Z9 239 aaKnown RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 SEMA3GQ9NS98 782 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 FAM86C1Q9NVL1 165 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 ENTPD4Q9Y227 616 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 PCDHGB3Q9Y5G1 929 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 LOC100130705A0A1B0GUX0 176 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 A0A1W2PS29 197 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 C5orf58C9J3I9 102 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 RECKO95980 971 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 CD59P13987 128 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 PAX7P23759 505 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 OR1E2P47887 323 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 KCNAB1Q14722 419 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 SMYD1Q8NB12 490 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 PIK3C3Q8NEB9 887 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 ZNF681Q96N22 645 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 RUBCNLQ9H714 662 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 TMEM9BQ9NQ34 198 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 ZCCHC3Q9NUD5 404 aaKnown RBP21.24■□□□□ 0.99
CDX1-201ENST00000231656 PLCL2Q9UPR0 1127 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 CCDC88CQ9P219 2028 aa21.24■□□□□ 0.99
CDX1-201ENST00000231656 TOX3O15405 576 aaPredicted RBP21.23■□□□□ 0.99
CDX1-201ENST00000231656 NR2F6P10588 404 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 CSNK2A2P19784 350 aaPredicted RBP21.23■□□□□ 0.99
CDX1-201ENST00000231656 ELK4P28324 431 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 POLR2IP36954 125 aaKnown RBP21.23■□□□□ 0.99
CDX1-201ENST00000231656 MAGEA8P43361 318 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 ABHD13Q7L211 337 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 KMT5CQ86Y97 462 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 CCDC116Q8IYX3 515 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 ADAMTS16Q8TE57 1224 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 SLC41A2Q96JW4 573 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 ZNF285Q96NJ3 590 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 SERINC2Q96SA4 455 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 OR51I1Q9H343 314 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 KCMF1Q9P0J7 381 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 MRPS2Q9Y399 296 aaKnown RBP21.23■□□□□ 0.99
CDX1-201ENST00000231656 PCDHGA8Q9Y5G5 932 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 LYVE1Q9Y5Y7 322 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 PRAMEF27A3QJZ7 478 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 JRKO75564 520 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 CD247P20963 164 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 PTGER1P34995 402 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 FEN1P39748 380 aaKnown RBP21.23■□□□□ 0.99
CDX1-201ENST00000231656 ARL4DP49703 201 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 IL18R1Q13478 541 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 CSRP2Q16527 193 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 CYP27C1Q4G0S4 372 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 ZNF691Q5VV52 312 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 RBM44Q6ZP01 1051 aaKnown RBP21.23■□□□□ 0.99
CDX1-201ENST00000231656 GALNT5Q7Z7M9 940 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 D2HGDHQ8N465 521 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 OR4D9Q8NGE8 314 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 OR4C15Q8NGM1 316 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 C10orf90Q96M02 699 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 ZNF768Q9H5H4 540 aaKnown RBP21.23■□□□□ 0.99
CDX1-201ENST00000231656 SYNDIG1Q9H7V2 258 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 NCDNQ9UBB6 729 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 FTSJ1Q9UET6 329 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 TESMINQ9Y4I5 508 aa21.23■□□□□ 0.99
CDX1-201ENST00000231656 ADAMTS20P59510 1910 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 ADAMDEC1O15204 470 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 MFN2O95140 757 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 C8orf89P0DMQ9 161 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 OR12D1P0DN82 309 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 ITGA2P17301 1181 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 ALOX12P18054 663 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 ACP1P24666 158 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 NBL1P41271 181 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 XCR1P46094 333 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 TNFRSF17Q02223 184 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 GPR19Q15760 415 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 DUSP7Q16829 419 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 PRTGQ2VWP7 1150 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 DEFB134Q4QY38 66 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 BORAQ6PGQ7 559 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 ARHGEF39Q8N4T4 335 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 APOBEC4Q8WW27 367 aaKnown RBP21.22■□□□□ 0.99
CDX1-201ENST00000231656 DPYSL5Q9BPU6 564 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 RSPO3Q9BXY4 272 aaPredicted RBP21.22■□□□□ 0.99
CDX1-201ENST00000231656 ING2Q9H160 280 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 PARD6AQ9NPB6 346 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 GIMAP4Q9NUV9 329 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 PHF11Q9UIL8 331 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 ZNF451Q9Y4E5 1061 aa21.22■□□□□ 0.99
CDX1-201ENST00000231656 LRP3O75074 770 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 DNAJB5O75953 348 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 MATN1P21941 496 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 KHKP50053 298 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 RUNX2Q13950 521 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 COL9A2Q14055 689 aaPredicted RBP21.21■□□□□ 0.99
CDX1-201ENST00000231656 SZRD1Q7Z422 152 aa21.21■□□□□ 0.99
CDX1-201ENST00000231656 SLC44A2Q8IWA5 706 aaPredicted RBP21.21■□□□□ 0.99
CDX1-201ENST00000231656 CHDHQ8NE62 594 aaPredicted RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 299.5 ms