RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 FBP2O00757 339 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 OR4F21O95013 312 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 KRT8P05787 483 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 ZSCAN5DPP0CG00 497 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 CFC1BP0CG36 223 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 CFC1P0CG37 223 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 RPL9P32969 192 aaKnown RBP6.18□□□□□ -1.42
NUP54-215ENST00000514313 ERVK-16P61578 105 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 ENPP2Q13822 863 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 RHBDD2Q6NTF9 364 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 USP43Q70EL4 1123 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 STKLD1Q8NE28 680 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 NUP37Q8NFH4 326 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 OR10T2Q8NGX3 314 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 FBXO25Q8TCJ0 367 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 SLC25A36Q96CQ1 311 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 SYT15Q9BQS2 421 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 CRACR2AQ9BSW2 395 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 RAB33BQ9H082 229 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 WDR76Q9H967 626 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 TUBGCP4Q9UGJ1 667 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 IKZF3Q9UKT9 509 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 AFF2P51816 1311 aa6.18□□□□□ -1.42
NUP54-215ENST00000514313 TRBV5-4A0A0C4DH59 114 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 TRIM49BA6NDI0 452 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 MAPK13O15264 365 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 CFLARO15519 480 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 IGLV1-44P01699 117 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 HNRNPA2B1P22626 353 aaKnown RBP6.17□□□□□ -1.42
NUP54-215ENST00000514313 DPP4P27487 766 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 PRPHP41219 470 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 HNMTP50135 292 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 TRIP10Q15642 601 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 MTHFSDQ2M296 383 aaKnown RBP6.17□□□□□ -1.42
NUP54-215ENST00000514313 PARP6Q2NL67 630 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 UNC50Q53HI1 259 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 SLC39A4Q6P5W5 647 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 AQP11Q8NBQ7 271 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 OR2T34Q8NGX1 318 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 OR2T6Q8NHC8 308 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 NSMCE3Q96MG7 304 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 CALHM2Q9HA72 323 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 WDR41Q9HAD4 459 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 NRN1Q9NPD7 142 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 EIF3KQ9UBQ5 218 aaKnown RBP6.17□□□□□ -1.42
NUP54-215ENST00000514313 ATP6V1HQ9UI12 483 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 FZR1Q9UM11 496 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 CHMP2BQ9UQN3 213 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 NIP7Q9Y221 180 aaKnown RBP eCLIP6.17□□□□□ -1.42
NUP54-215ENST00000514313 MYH15Q9Y2K3 1946 aa6.17□□□□□ -1.42
NUP54-215ENST00000514313 LOC105371242A0A075B767 164 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 MPTX1A8MV57 137 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 E2F3O00716 465 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 ZNF821O75541 412 aaPredicted RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 IDH1O75874 414 aaKnown RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 PRAMEF12O95522 483 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 ANXA4P09525 319 aaPredicted RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 THRBP10828 461 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 TSPAN8P19075 237 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 DLSTP36957 453 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 SLC1A6P48664 564 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 GSCP56915 257 aaPredicted RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 HERVK_113P63132 956 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 ERVK-8P63133 956 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 KRTAP24-1Q3LI83 254 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 RANBP3LQ86VV4 465 aaPredicted RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 CARM1Q86X55 608 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 UNC5CLQ8IV45 518 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 GIPC3Q8TF64 312 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 PCNPQ8WW12 178 aaKnown RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 RCHY1Q96PM5 261 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 RBM24Q9BX46 236 aaKnown RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 ERVK-6Q9BXR3 956 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 KAT8Q9H7Z6 458 aaKnown RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 Q9HAA7 133 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 FARSBQ9NSD9 589 aaKnown RBP6.16□□□□□ -1.42
NUP54-215ENST00000514313 RDH8Q9NYR8 311 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 DUSP12Q9UNI6 340 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 LRP12Q9Y561 859 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 FKBP7Q9Y680 259 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 PARD3Q8TEW0 1356 aa6.16□□□□□ -1.42
NUP54-215ENST00000514313 A0A087WYN8 130 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 A0A0A6YYD4 124 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 H0YCG3 227 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 SDHDO14521 159 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 GOT2P00505 430 aaKnown RBP6.15□□□□□ -1.42
NUP54-215ENST00000514313 ASNSP08243 561 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 ADORA3P0DMS8 318 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 PRG2P13727 222 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 RFC2P35250 354 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 RAG2P55895 527 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 KRTAP10-11P60412 298 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 PPIAP62937 165 aaKnown RBP6.15□□□□□ -1.42
NUP54-215ENST00000514313 SRYQ05066 204 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 SNTB2Q13425 540 aaKnown RBP6.15□□□□□ -1.42
NUP54-215ENST00000514313 EXOSC2Q13868 293 aaKnown RBP6.15□□□□□ -1.42
NUP54-215ENST00000514313 SHROOM1Q2M3G4 852 aaPredicted RBP6.15□□□□□ -1.42
NUP54-215ENST00000514313 ANKRD55Q3KP44 614 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 TMEM30BQ3MIR4 351 aa6.15□□□□□ -1.42
NUP54-215ENST00000514313 WDR25Q64LD2 544 aaPredicted RBP6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms